JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRPL44_chr2_223952463_223972714	0/0	a0002	332	8	8	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	a0003	332	1	0	0	0	0	1	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	a0004	332	1	0	0	1	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	a0005	87	1	0	1	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL45_chr17_38292168_38328211	0/1	a0001	306	193	19	35	109	7	22	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	a0002	306	81	70	9	0	0	2	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	a0003	306	9	1	7	0	1	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	a0004	306	1	0	0	1	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	a0005	306	1	1	0	0	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	a0006	306	1	0	1	0	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	a0007	306	1	1	0	0	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL46_chr15_88454478_88472388	1/1	a0001	279	248	63	52	89	11	31	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	a0002	279	24	21	2	1	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	a0003	279	10	7	1	0	1	1	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	a0004	279	5	4	1	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	a0005	279	2	0	2	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	a0006	279	2	2	0	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	a0007	279	1	1	0	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL47_chr3_179583285_179609638	1/1	a0001	250	334	82	63	151	7	29	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	a0002	250	53	8	7	26	3	9	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	a0003	250	1	0	0	1	0	0	copy fasta	MRPL47	chr3	179583285	179609638
MRPL48_chr11_73782874_73870133	1/1	a0001	212	330	87	59	130	10	42	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	a0002	212	4	3	1	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	a0003	212	1	1	0	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	a0004	212	1	1	0	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL49_chr11_65117321_65132371	1/1	a0001	166	391	98	72	161	16	42	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	a0002	166	6	0	0	6	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	a0003	166	1	0	0	1	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL4_chr19_10247214_10265055	1/1	a0001	311	406	84	77	182	16	45	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	a0002	311	4	4	0	0	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	a0003	311	3	0	1	0	0	2	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	a0004	311	1	0	0	0	0	1	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	a0005	311	1	0	0	1	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	a0006	311	1	0	0	1	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL50_chr9_101382633_101403618	1/1	a0001	158	415	94	75	185	17	42	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	a0002	158	40	0	7	29	1	3	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	a0003	158	3	0	0	3	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	a0004	158	2	0	0	2	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	a0005	158	2	0	0	2	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	a0006	158	1	0	0	1	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	a0007	158	1	0	0	0	0	1	copy fasta	MRPL50	chr9	101382633	101403618
MRPL51_chr12_6486886_6498262	1/1	a0001	128	435	96	78	202	11	46	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	a0002	128	1	0	0	0	1	0	copy fasta	MRPL51	chr12	6486886	6498262
MRPL52_chr14_22824887_22840037	0/0	a0001	122	243	56	36	127	3	21	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/1	a0002	122	174	24	38	84	8	19	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	1/0	a0003	122	40	18	10	1	4	6	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	a0004	122	1	0	0	0	1	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL53_chr2_74466982_74477680	0/1	a0001	112	250	74	25	137	2	11	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	1/0	a0002	112	130	20	43	31	14	21	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	0/0	a0003	112	2	2	0	0	0	0	copy fasta	MRPL53	chr2	74466982	74477680