JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRPL53_chr2_74466982_74477680	0/0	a0004	112	1	0	1	0	0	0	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	0/0	a0005	112	1	0	1	0	0	0	copy fasta	MRPL53	chr2	74466982	74477680
MRPL54_chr19_3757682_3772565	1/1	a0001	138	431	96	80	187	18	48	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	0/0	a0002	138	1	0	0	1	0	0	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	0/0	a0003	138	1	0	0	1	0	0	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	0/0	a0004	138	1	0	0	1	0	0	copy fasta	MRPL54	chr19	3757682	3772565
MRPL55_chr1_228101685_228114299	1/1	a0001	128	375	72	70	177	12	42	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	a0002	128	19	18	1	0	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	a0003	128	7	4	0	3	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	a0004	128	2	0	0	2	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	a0005	128	1	0	1	0	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL57_chr13_21171658_21184084	1/1	a0001	102	408	96	76	176	15	43	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	a0002	102	1	0	0	0	1	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	a0003	102	1	0	0	1	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	a0004	102	1	0	0	1	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	a0005	102	1	0	0	0	0	1	copy fasta	MRPL57	chr13	21171658	21184084
MRPL58_chr17_75007670_75026261	1/1	a0001	206	334	60	67	147	14	44	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	a0002	206	24	18	3	0	2	1	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	a0003	206	11	11	0	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	a0004	206	8	0	0	8	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	a0005	206	7	7	0	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	a0006	206	1	0	1	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	a0007	206	1	0	1	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	a0008	206	1	0	0	0	0	1	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	a0009	206	1	0	0	1	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL9_chr1_151754647_151768496	1/0	a0001	267	228	32	38	119	7	31	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/1	a0002	267	135	46	26	49	5	8	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	a0003	267	50	14	10	20	4	2	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	a0004	267	17	4	7	4	1	1	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	a0005	267	2	0	0	0	0	2	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	a0006	267	1	0	1	0	0	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	a0007	267	1	0	0	1	0	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	a0008	247	1	0	0	1	0	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	a0009	267	1	0	0	0	1	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPS10_chr6_42201807_42222861	1/1	a0001	201	400	94	70	175	16	43	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	a0002	201	2	2	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	a0003	201	1	0	0	1	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	a0004	201	1	0	0	0	0	1	copy fasta	MRPS10	chr6	42201807	42222861
MRPS11_chr15_88462708_88485776	1/1	a0001	194	218	74	47	57	12	26	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	a0002	194	21	18	3	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	a0003	194	5	4	0	1	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS12_chr19_38925944_38938168	1/1	a0001	138	411	91	78	178	14	48	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	a0002	138	5	5	0	0	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	a0003	138	1	0	0	1	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	a0004	138	1	0	0	1	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS14_chr1_175007958_175028425	1/1	a0001	128	395	94	70	172	17	40	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	a0002	128	2	0	0	2	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	a0003	124	1	0	0	0	1	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS15_chr1_36450718_36469384	1/1	a0001	257	418	96	64	201	16	39	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	a0002	257	3	3	0	0	0	0	copy fasta	MRPS15	chr1	36450718	36469384