JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRPS15_chr1_36450718_36469384	0/0	a0003	257	2	0	0	0	2	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	a0004	257	1	1	0	0	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	a0005	257	1	0	0	0	0	1	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	a0006	257	1	0	0	1	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	a0007	257	1	0	0	1	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	a0008	257	1	0	0	1	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS16_chr10_73243849_73257644	1/1	a0001	137	330	76	34	178	2	38	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	a0002	137	14	12	2	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS17_chr7_55946877_55961500	1/1	a0001	130	398	80	66	191	18	41	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	a0002	130	24	14	2	7	0	1	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	a0003	130	1	1	0	0	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	a0004	130	1	1	0	0	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS18A_chr6_43666202_43692791	1/1	a0001	196	373	85	50	179	16	41	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	a0002	196	5	5	0	0	0	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	a0003	196	1	0	0	0	0	1	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	a0004	196	1	0	0	1	0	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18B_chr6_30612840_30631392	0/1	a0001	258	400	83	82	170	18	46	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	a0002	258	21	8	2	11	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	a0003	258	1	1	0	0	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	a0004	258	1	0	0	1	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18C_chr4_83451058_83467298	1/1	a0001	142	393	95	70	172	16	38	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	0/0	a0002	142	1	1	0	0	0	0	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS21_chr1_150288861_150313979	0/1	a0001	87	351	70	65	164	9	42	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	a0002	87	29	24	2	0	2	1	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	1/0	a0003	87	3	0	1	0	1	0	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	a0004	87	3	0	2	0	0	1	copy fasta	MRPS21	chr1	150288861	150313979
MRPS22_chr3_139339020_139362129	1/1	a0001	360	302	80	64	110	12	34	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	a0002	360	4	4	0	0	0	0	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	a0003	360	2	2	0	0	0	0	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	a0004	360	1	0	0	0	0	1	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	a0005	360	1	0	0	0	0	1	copy fasta	MRPS22	chr3	139339020	139362129
MRPS23_chr17_57829781_57855044	1/1	a0001	190	392	94	76	169	14	37	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	a0002	190	3	0	0	2	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	a0003	6	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS24_chr7_43861558_43874517	1/1	a0001	167	373	87	72	159	17	36	copy fasta	MRPS24	chr7	43861558	43874517
MRPS24_chr7_43861558_43874517	0/0	a0002	167	56	9	8	37	1	1	copy fasta	MRPS24	chr7	43861558	43874517
MRPS24_chr7_43861558_43874517	0/0	a0003	167	1	0	0	0	0	1	copy fasta	MRPS24	chr7	43861558	43874517
MRPS25_chr3_15043512_15070315	1/1	a0001	173	367	93	66	144	12	50	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	a0002	173	1	1	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS26_chr20_3041052_3053250	1/1	a0001	205	437	92	70	205	18	50	copy fasta	MRPS26	chr20	3041052	3053250
MRPS26_chr20_3041052_3053250	0/0	a0002	205	1	0	0	1	0	0	copy fasta	MRPS26	chr20	3041052	3053250
MRPS27_chr5_72214403_72325240	1/1	a0001	414	282	52	54	142	6	26	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	a0002	414	60	27	16	1	6	10	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	a0003	414	2	1	0	0	0	1	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	a0004	414	1	0	0	1	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	a0005	414	1	0	0	0	0	1	copy fasta	MRPS27	chr5	72214403	72325240
MRPS28_chr8_79913717_80035259	1/1	a0001	187	271	62	55	114	10	28	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	a0002	187	11	10	1	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	a0003	187	10	7	3	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	a0004	187	5	5	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259