JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRPS28_chr8_79913717_80035259	0/0	a0005	187	1	0	1	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	a0006	187	1	1	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	a0007	187	1	1	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS2_chr9_135495682_135509671	1/1	a0001	296	323	57	57	153	16	38	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0002	296	53	27	9	9	0	8	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0003	296	13	13	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0004	296	7	0	5	0	1	1	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0005	296	3	0	1	0	1	1	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0006	296	2	2	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0007	296	1	0	0	1	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0008	296	1	0	0	0	0	1	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0009	296	1	0	0	0	0	1	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0010	296	1	1	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	a0011	296	1	0	0	1	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS30_chr5_44803947_44820514	1/1	a0001	439	229	75	37	81	5	29	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	a0002	439	161	13	36	88	9	15	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	a0003	439	1	0	1	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	a0004	439	1	0	0	1	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	a0005	439	1	0	1	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	a0006	439	1	0	1	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS31_chr13_40724128_40776190	1/1	a0001	395	361	83	47	189	12	28	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	a0002	395	41	5	14	11	2	9	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	a0003	395	1	0	1	0	0	0	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	a0004	395	1	0	0	0	0	1	copy fasta	MRPS31	chr13	40724128	40776190
MRPS33_chr7_140997610_141019952	1/1	a0001	106	332	82	66	128	16	38	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	a0002	106	8	8	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS34_chr16_1766895_1778134	1/0	a0001	218	360	93	69	139	16	42	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/1	a0002	218	69	1	7	55	0	5	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	a0003	218	2	2	0	0	0	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	a0004	218	2	0	0	0	1	1	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	a0005	218	2	0	1	0	1	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	a0006	218	1	0	1	0	0	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS35_chr12_27705832_27761295	1/1	a0001	323	283	67	50	130	9	25	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	a0002	323	60	0	10	40	3	7	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	a0003	323	13	11	2	0	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	a0004	323	1	0	0	1	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	a0005	323	1	0	0	1	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS36_chr5_69212760_69235158	0/1	a0001	103	405	90	74	184	12	44	copy fasta	MRPS36	chr5	69212760	69235158
MRPS36_chr5_69212760_69235158	0/0	a0002	103	4	0	0	4	0	0	copy fasta	MRPS36	chr5	69212760	69235158
MRPS5_chr2_95080369_95126808	1/1	a0001	430	283	69	54	118	7	33	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	a0002	430	2	0	0	0	1	1	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	a0003	430	1	0	0	1	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	a0004	430	1	1	0	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	a0005	430	1	0	0	0	0	1	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	a0006	430	1	0	0	1	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	a0007	430	1	0	0	0	0	1	copy fasta	MRPS5	chr2	95080369	95126808
MRPS6_chr21_34068578_34148030	1/1	a0001	125	295	84	66	106	8	29	copy fasta	MRPS6	chr21	34068578	34148030
MRPS6_chr21_34068578_34148030	0/0	a0002	125	1	0	0	0	0	1	copy fasta	MRPS6	chr21	34068578	34148030
MRPS7_chr17_75256879_75271376	0/1	a0001	242	220	31	47	97	11	33	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	1/0	a0002	242	124	63	19	23	5	13	copy fasta	MRPS7	chr17	75256879	75271376