JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRPS7_chr17_75256879_75271376	0/0	a0003	242	1	0	0	1	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	0/0	a0004	242	1	0	0	1	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS9_chr2_105033069_105104960	1/1	a0001	396	381	76	60	182	15	46	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	a0002	396	6	6	0	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	a0003	396	2	0	2	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	a0004	396	1	0	1	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	a0005	396	1	0	1	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	a0006	396	1	0	0	1	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	a0007	396	1	0	0	1	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	a0008	396	1	0	0	0	1	0	copy fasta	MRPS9	chr2	105033069	105104960
MRRF_chr9_122259882_122336337	1/1	a0001	262	255	65	37	127	4	20	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	a0002	262	4	4	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	a0003	262	4	0	1	3	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	a0004	262	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRS2_chr6_24397936_24431190	1/1	a0001	443	326	89	63	129	16	27	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	a0002	443	50	8	4	32	0	6	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	a0003	443	49	0	10	35	0	4	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	a0004	443	3	1	1	0	0	1	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	a0005	443	2	0	2	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	a0006	443	1	0	0	0	0	1	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	a0007	443	1	0	0	0	0	1	copy fasta	MRS2	chr6	24397936	24431190
MRTFA_chr22_40405289_40641719	1/1	a0001	43	256	78	40	96	12	28	copy fasta	MRTFA	chr22	40405289	40641719
MRTFB_chr16_14066319_14271773	1/1	a0001	1099	234	87	21	101	6	17	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	a0002	1099	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	a0003	1099	1	0	1	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	a0004	1099	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	a0005	1099	1	0	0	0	0	1	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	a0006	1099	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	a0007	1099	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTO4_chr1_19246805_19265128	1/1	a0001	239	393	94	78	157	16	46	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	a0002	239	2	0	2	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	a0003	239	1	0	0	1	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	a0004	239	1	1	0	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	a0005	239	1	1	0	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MS4A10_chr11_60780333_60806305	1/1	a0001	267	412	91	75	189	16	39	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	a0002	267	14	6	5	0	1	2	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	a0003	267	3	0	1	0	1	1	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	a0004	267	1	0	1	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	a0005	267	1	1	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	a0006	267	1	0	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A12_chr11_60487778_60512430	1/0	a0001	267	251	49	40	127	6	28	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/1	a0002	70	181	45	36	71	10	18	copy fasta	MS4A12	chr11	60487778	60512430
MS4A13_chr11_60510392_60547721	0/0	a0001	152	300	56	48	148	13	35	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/1	a0002	152	99	14	24	51	2	7	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	1/0	a0003	152	19	16	1	1	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	a0004	152	2	0	0	2	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	a0005	152	1	0	1	0	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	a0006	152	1	0	0	0	1	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A14_chr11_60391459_60422756	0/1	a0001	64	252	38	47	130	8	28	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	1/0	a0002	679	120	30	21	53	3	12	copy fasta	MS4A14	chr11	60391459	60422756