JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MS4A14_chr11_60391459_60422756	0/0	a0003	679	24	3	4	13	0	4	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0004	679	13	12	0	0	0	1	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0005	679	9	1	0	7	0	1	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0006	679	2	2	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0007	679	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0008	679	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0009	679	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0010	679	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0011	654	1	0	0	0	1	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0012	679	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0013	679	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	a0014	679	1	0	0	1	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A15_chr11_60751867_60781733	0/0	a0001	240	194	4	24	137	11	18	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	1/0	a0002	240	152	70	21	38	3	19	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/1	a0003	240	95	24	32	29	4	5	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	a0004	240	3	0	0	0	0	3	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	a0005	240	3	0	0	2	0	1	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	a0006	240	1	0	1	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	a0007	240	1	1	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	a0008	240	1	1	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A18_chr11_60719720_60750028	1/0	a0001	398	381	80	69	180	16	35	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0002	398	6	0	0	6	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0003	398	6	6	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0004	398	5	5	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0005	398	5	0	0	5	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/1	a0006	398	5	0	1	0	2	1	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0007	398	2	0	0	2	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0008	398	2	0	0	2	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0009	398	1	1	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0010	398	1	0	0	1	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0011	398	1	0	0	1	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	a0012	398	1	0	0	1	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A1_chr11_60450847_60475752	1/1	a0001	297	445	94	70	220	18	41	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	a0002	146	1	0	0	0	0	1	copy fasta	MS4A1	chr11	60450847	60475752
MS4A2_chr11_60083664_60103467	1/1	a0001	244	345	67	67	148	16	45	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	a0002	244	58	16	2	40	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	a0003	244	8	8	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	a0004	244	4	4	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	a0005	244	1	0	1	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	a0006	244	1	0	0	0	0	1	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	a0007	244	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A3_chr11_60051665_60076115	1/1	a0001	214	406	91	72	186	16	39	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	a0002	214	1	0	0	0	0	1	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	a0003	214	1	1	0	0	0	0	copy fasta	MS4A3	chr11	60051665	60076115
MS4A4A_chr11_60275666_60313970	1/1	a0001	239	291	62	55	138	6	28	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	a0002	239	83	14	9	51	3	6	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	a0003	239	56	20	6	19	3	8	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4E_chr11_60195270_60248137	0/1	a0001	331	280	58	62	123	8	28	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0002	331	51	7	4	29	4	7	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0003	331	35	0	0	34	0	1	copy fasta	MS4A4E	chr11	60195270	60248137