JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MS4A4E_chr11_60195270_60248137	1/0	a0004	331	19	13	3	0	2	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0005	331	6	6	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0006	331	3	0	0	3	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0007	294	3	0	1	1	0	1	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0008	294	2	1	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0009	331	2	0	0	2	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0010	331	2	2	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0011	294	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0012	331	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0013	331	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0014	331	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0015	294	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0016	331	1	0	0	0	0	1	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	a0017	331	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A5_chr11_60424572_60452792	1/1	a0001	200	450	92	70	224	18	44	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	a0002	200	5	0	3	0	0	2	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	a0003	200	3	2	1	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	a0004	200	2	2	0	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	a0005	200	1	1	0	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	a0006	200	1	1	0	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A6A_chr11_60167497_60188083	1/1	a0001	225	293	83	38	145	5	20	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	a0002	225	70	4	22	17	6	21	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	a0003	225	1	1	0	0	0	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	a0004	225	1	0	0	0	0	1	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	a0005	225	1	0	0	0	1	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6E_chr11_60322255_60346341	1/0	a0001	147	322	80	42	147	16	36	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/1	a0002	147	124	18	34	59	2	10	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	a0003	147	3	0	0	3	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	a0004	147	1	0	0	1	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A7_chr11_60373532_60400948	1/1	a0001	240	385	62	65	200	14	42	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	a0002	240	15	15	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	a0003	240	8	8	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	a0004	240	3	3	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	a0005	240	1	0	1	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	a0006	240	1	1	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	a0007	240	1	1	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A8_chr11_60694612_60720807	1/1	a0001	250	383	70	67	188	14	42	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	a0002	250	19	18	1	0	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MSANTD1_chr4_3244159_3261613	1/1	a0001	278	427	96	82	187	18	42	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	a0002	278	2	0	0	2	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	a0003	278	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	a0004	278	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	a0005	278	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	a0006	278	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	a0007	278	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD2_chr11_124761498_124805406	1/1	a0001	559	322	89	52	130	12	37	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD2_chr11_124761498_124805406	0/0	a0002	559	1	1	0	0	0	0	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD2_chr11_124761498_124805406	0/0	a0003	559	1	0	0	0	0	1	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD3_chr9_100422143_100456734	1/1	a0001	275	326	90	55	125	12	42	copy fasta	MSANTD3	chr9	100422143	100456734
MSANTD3_chr9_100422143_100456734	0/0	a0002	275	1	0	1	0	0	0	copy fasta	MSANTD3	chr9	100422143	100456734