JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MSH3_chr5_80649652_80881815	0/0	a0015	1143	2	0	0	2	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0016	1137	2	0	1	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0017	1137	2	0	0	2	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0018	1134	2	0	0	2	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0019	1134	2	0	0	0	1	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0020	1146	2	2	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0021	1146	2	1	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0022	1140	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0023	1140	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0024	1143	1	0	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0025	1137	1	0	0	0	0	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0026	1137	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0027	1137	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0028	1137	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0029	1137	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0030	1137	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0031	1143	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0032	1146	1	0	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0033	1137	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0034	1137	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0035	1134	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0036	1137	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0037	1143	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0038	1146	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0039	1143	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH4_chr1_75791882_75918242	1/1	a0001	936	225	47	46	101	7	22	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	a0002	936	72	27	18	11	6	10	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	a0003	936	20	12	4	2	1	1	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	a0004	936	5	0	2	0	0	3	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	a0005	936	5	0	4	0	0	1	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	a0006	936	2	2	0	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	a0007	936	1	1	0	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	a0008	936	1	0	0	0	0	1	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	a0009	936	1	1	0	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH5_chr6_31735005_31767676	0/1	a0001	834	325	79	57	131	18	39	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	a0002	834	54	2	16	33	0	3	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	a0003	834	5	2	2	0	0	1	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	a0004	834	5	5	0	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	a0005	834	3	3	0	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	a0006	834	1	1	0	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	a0007	834	1	0	0	1	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	a0008	834	1	0	0	1	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	a0009	834	1	0	0	0	0	1	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	a0010	834	1	0	1	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH6_chr2_47778145_47811953	1/1	a0001	1360	287	65	65	111	10	34	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0002	1360	90	19	12	49	6	4	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0003	1360	2	0	0	2	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0004	1360	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0005	1360	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0006	1360	1	0	1	0	0	0	copy fasta	MSH6	chr2	47778145	47811953