JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MSH6_chr2_47778145_47811953	0/0	a0007	1360	1	1	0	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0008	1360	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0009	1360	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0010	1360	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0011	1360	1	0	0	0	0	1	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0012	1360	1	0	0	0	0	1	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0013	1360	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	a0014	1360	1	1	0	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSI1_chr12_120336330_120374164	1/1	a0001	362	348	94	58	138	16	40	copy fasta	MSI1	chr12	120336330	120374164
MSI2_chr17_57251523_57689689	1/1	a0001	328	168	74	32	42	4	14	copy fasta	MSI2	chr17	57251523	57689689
MSL1_chr17_40116971_40141917	1/1	a0001	614	354	86	64	166	14	22	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	a0002	211	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	a0003	614	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL2_chr3_136143917_136201335	1/1	a0001	577	306	92	65	92	12	43	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	a0002	577	3	0	1	0	2	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	a0003	577	1	0	0	0	0	1	copy fasta	MSL2	chr3	136143917	136201335
MSL3_chrX_11753237_11780772	1/1	a0001	521	293	80	52	120	13	26	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	a0002	521	2	0	0	0	0	2	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	a0003	422	1	0	1	0	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	a0004	503	1	0	0	1	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSLN_chr16_755734_773862	0/0	a0000	0	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	1/0	a0001	622	160	21	29	86	7	16	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/1	a0002	622	98	22	19	45	2	9	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0003	622	23	14	2	3	1	3	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0004	622	17	0	1	9	0	7	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0005	622	17	2	3	4	0	8	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0006	622	14	11	3	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0007	622	9	9	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0008	622	7	7	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0009	284	6	0	3	2	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0010	622	4	3	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0011	622	4	0	3	0	1	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0012	622	3	0	3	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0013	622	3	3	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0014	622	3	2	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0015	622	2	0	0	2	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0016	622	2	1	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0017	622	2	0	1	0	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0018	284	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0019	622	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0020	622	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0021	622	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0022	622	1	0	0	0	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0023	622	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0024	622	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0025	622	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0026	622	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0027	165	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0028	284	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	a0029	622	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862