JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MSLN_chr16_755734_773862	0/0	a0030	622	1	0	0	0	1	0	copy fasta	MSLN	chr16	755734	773862
MSMB_chr10_46028313_46051269	1/1	a0001	114	445	88	68	227	18	42	copy fasta	MSMB	chr10	46028313	46051269
MSMB_chr10_46028313_46051269	0/0	a0002	114	1	0	0	1	0	0	copy fasta	MSMB	chr10	46028313	46051269
MSMO1_chr4_165322669_165348164	1/1	a0001	293	450	93	83	210	16	46	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	a0002	293	5	5	0	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	a0003	293	4	0	0	4	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	a0004	293	1	0	1	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	a0005	293	1	1	0	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	a0006	293	1	1	0	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMP_chr9_35747990_35759276	1/1	a0001	139	382	84	68	173	14	41	copy fasta	MSMP	chr9	35747990	35759276
MSMP_chr9_35747990_35759276	0/0	a0002	139	36	0	0	35	0	1	copy fasta	MSMP	chr9	35747990	35759276
MSMP_chr9_35747990_35759276	0/0	a0003	139	4	4	0	0	0	0	copy fasta	MSMP	chr9	35747990	35759276
MSMP_chr9_35747990_35759276	0/0	a0004	139	2	2	0	0	0	0	copy fasta	MSMP	chr9	35747990	35759276
MSN_chrX_65662654_65746931	1/1	a0001	577	169	52	26	66	7	16	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	a0002	346	1	0	0	1	0	0	copy fasta	MSN	chrX	65662654	65746931
MSR1_chr8_16102881_16197651	1/1	a0001	451	235	71	47	78	12	25	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0002	451	70	4	7	48	2	9	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0003	451	8	6	2	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0004	451	7	6	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0005	292	2	0	2	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0006	451	2	0	2	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0007	451	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0008	451	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0009	451	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0010	451	1	0	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0011	451	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	a0012	451	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSRA_chr8_10049292_10433891	1/1	a0001	235	282	80	54	100	10	36	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	a0002	213	2	0	0	2	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	a0003	235	2	0	0	0	0	2	copy fasta	MSRA	chr8	10049292	10433891
MSRB1_chr16_1933229_1948199	1/1	a0001	94	445	97	84	200	16	46	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	a0002	94	1	0	0	0	0	1	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	a0003	94	1	1	0	0	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	a0004	94	1	0	0	0	0	1	copy fasta	MSRB1	chr16	1933229	1948199
MSRB2_chr10_23090579_23127013	1/1	a0001	182	405	92	72	181	18	40	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	a0002	182	29	0	3	24	0	2	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	a0003	182	5	0	0	5	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	a0004	182	1	0	1	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	a0005	182	1	1	0	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	a0006	182	1	1	0	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB3_chr12_65273683_65471907	1/1	a0001	185	310	90	56	116	12	34	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	a0002	185	2	0	2	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSS51_chr10_73418579_73438561	1/1	a0001	460	281	70	40	133	6	30	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	a0002	460	14	12	2	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	a0003	460	13	0	0	13	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	a0004	460	2	0	2	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	a0005	460	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	a0006	88	1	0	0	0	0	1	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	a0007	102	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	a0008	460	1	0	0	0	0	1	copy fasta	MSS51	chr10	73418579	73438561