JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MSS51_chr10_73418579_73438561	0/0	a0009	460	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	a0010	460	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MST1R_chr3_49882002_49908873	1/0	a0001	1400	135	22	27	53	7	25	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/1	a0002	1400	124	54	27	32	4	6	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0003	1400	11	11	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0004	1400	7	0	7	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0005	1400	4	1	2	0	1	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0006	1400	3	0	0	0	0	3	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0007	1400	2	2	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0008	1400	2	0	0	0	0	2	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0009	1400	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0010	1400	1	0	0	0	0	1	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0011	1400	1	0	0	1	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0012	1400	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0013	1400	1	0	1	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0014	1400	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0015	1400	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0016	1400	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0017	1400	1	0	0	0	0	1	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	a0018	1400	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1_chr3_49678947_49694474	1/1	a0001	725	235	72	44	80	10	27	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0002	725	62	18	14	15	7	8	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0003	725	11	0	8	3	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0004	725	3	3	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0005	725	2	0	0	2	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0006	725	2	2	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0007	725	1	1	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0008	725	1	0	0	0	1	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0009	725	1	0	0	0	0	1	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0010	725	1	0	0	1	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	a0011	725	1	0	0	1	0	0	copy fasta	MST1	chr3	49678947	49694474
MSTN_chr2_190050700_190067729	1/1	a0001	375	332	54	68	158	12	38	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	a0002	375	27	25	2	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	a0003	375	18	18	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	a0004	375	3	0	0	3	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	a0005	375	3	0	0	3	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	a0006	375	1	1	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTO1_chr1_155605218_155619951	1/1	a0001	570	220	69	47	57	12	33	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	a0002	570	158	11	16	112	6	13	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	a0003	570	7	7	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	a0004	570	4	4	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	a0005	570	3	2	1	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	a0006	570	2	2	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	a0007	570	1	0	0	1	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	a0008	570	1	0	1	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	a0009	570	1	0	1	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	a0010	570	1	1	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSX1_chr4_4854665_4868936	1/1	a0001	303	375	88	69	164	14	38	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	a0002	303	38	2	13	14	2	7	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	a0003	303	16	0	0	16	0	0	copy fasta	MSX1	chr4	4854665	4868936