JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MSX1_chr4_4854665_4868936	0/0	a0004	303	3	0	0	3	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	a0005	303	2	2	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	a0006	303	2	0	2	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	a0007	303	1	0	0	0	0	1	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	a0008	303	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	a0009	303	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	a0010	303	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX2_chr5_174719582_174735896	0/1	a0001	267	271	34	54	136	11	35	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	1/0	a0002	267	82	63	8	6	1	3	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	a0003	267	2	0	2	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	a0004	267	1	1	0	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MT1A_chr16_56633666_56645087	0/1	a0001	61	232	22	51	120	10	28	copy fasta	MT1A	chr16	56633666	56645087
MT1A_chr16_56633666_56645087	1/0	a0002	61	144	68	20	38	6	11	copy fasta	MT1A	chr16	56633666	56645087
MT1A_chr16_56633666_56645087	0/0	a0003	61	72	8	9	44	2	9	copy fasta	MT1A	chr16	56633666	56645087
MT1B_chr16_56646886_56658204	1/1	a0001	61	451	96	76	218	13	46	copy fasta	MT1B	chr16	56646886	56658204
MT1B_chr16_56646886_56658204	0/0	a0002	61	4	0	2	0	2	0	copy fasta	MT1B	chr16	56646886	56658204
MT1B_chr16_56646886_56658204	0/0	a0003	61	1	0	0	0	1	0	copy fasta	MT1B	chr16	56646886	56658204
MT1E_chr16_56620781_56632112	1/1	a0001	127	444	97	84	197	18	46	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	a0002	127	11	0	0	11	0	0	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	a0003	127	2	0	0	0	0	2	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	a0004	127	1	1	0	0	0	0	copy fasta	MT1E	chr16	56620781	56632112
MT1F_chr16_56652959_56664303	1/1	a0001	61	452	88	80	220	16	46	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	a0002	61	7	7	0	0	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	a0003	61	2	2	0	0	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	a0004	61	1	1	0	0	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1G_chr16_56661730_56673065	1/1	a0001	62	464	98	84	216	16	48	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	a0002	62	4	0	0	4	0	0	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	a0003	62	1	0	0	1	0	0	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	a0004	62	1	0	0	1	0	0	copy fasta	MT1G	chr16	56661730	56673065
MT1HL1_chr1_236999103_237009441	1/1	a0001	61	465	97	84	220	16	46	copy fasta	MT1HL1	chr1	236999103	237009441
MT1HL1_chr1_236999103_237009441	0/0	a0002	61	2	2	0	0	0	0	copy fasta	MT1HL1	chr1	236999103	237009441
MT1HL1_chr1_236999103_237009441	0/0	a0003	61	1	1	0	0	0	0	copy fasta	MT1HL1	chr1	236999103	237009441
MT1H_chr16_56664814_56676129	0/0	a0000	0	1	1	0	0	0	0	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	1/1	a0001	61	433	78	82	209	16	46	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	0/0	a0002	61	14	14	0	0	0	0	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	0/0	a0003	61	1	1	0	0	0	0	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	0/0	a0004	61	1	0	0	1	0	0	copy fasta	MT1H	chr16	56664814	56676129
MT1M_chr16_56627659_56638981	0/1	a0001	61	316	53	71	140	14	37	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	1/0	a0002	61	127	41	11	61	4	9	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	a0003	61	1	1	0	0	0	0	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	a0004	61	1	0	0	1	0	0	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	a0005	61	1	1	0	0	0	0	copy fasta	MT1M	chr16	56627659	56638981
MT1X_chr16_56677470_56689196	0/1	a0001	61	443	80	80	222	16	44	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	a0002	61	6	6	0	0	0	0	copy fasta	MT1X	chr16	56677470	56689196
MT2A_chr16_56603584_56614497	0/0	a0001	61	454	94	76	218	16	50	copy fasta	MT2A	chr16	56603584	56614497
MT2A_chr16_56603584_56614497	0/0	a0002	61	4	0	0	4	0	0	copy fasta	MT2A	chr16	56603584	56614497
MT3_chr16_56584528_56596085	1/1	a0001	68	438	84	78	222	14	38	copy fasta	MT3	chr16	56584528	56596085
MT4_chr16_56560073_56573957	0/1	a0001	62	337	63	67	152	17	37	copy fasta	MT4	chr16	56560073	56573957
MT4_chr16_56560073_56573957	1/0	a0002	62	82	24	3	50	0	4	copy fasta	MT4	chr16	56560073	56573957
MT4_chr16_56560073_56573957	0/0	a0003	62	8	2	4	0	1	1	copy fasta	MT4	chr16	56560073	56573957