JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTCH1_chr6_36963141_36991196	0/0	a0002	91	16	1	0	13	0	2	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	a0003	389	2	0	1	0	1	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	a0004	389	1	1	0	0	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	a0005	389	1	0	0	0	0	1	copy fasta	MTCH1	chr6	36963141	36991196
MTCH2_chr11_47612317_47647559	1/1	a0001	303	279	84	43	114	10	26	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	a0002	303	88	5	21	46	2	14	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	a0003	303	1	0	0	0	0	1	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	a0004	303	1	0	0	0	0	1	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	a0005	303	1	1	0	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCL1_chr18_8700556_8837778	0/0	a0001	2011	51	10	7	27	2	5	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0002	2011	37	5	11	16	1	4	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	1/0	a0003	2011	31	14	2	13	1	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/1	a0004	2011	25	2	5	14	0	3	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0005	2011	24	16	2	6	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0006	2011	23	1	5	12	1	4	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0007	2011	21	7	5	8	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0008	2011	14	0	1	11	1	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0009	2011	12	1	1	9	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0010	2011	6	5	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0011	2011	6	0	0	6	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0012	2011	5	1	3	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0013	2011	4	3	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0014	2011	4	0	2	1	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0015	2011	4	0	2	0	1	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0016	2011	3	1	2	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0017	2011	3	0	2	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0018	2011	3	1	1	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0019	2011	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0020	2011	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0021	2011	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0022	2011	2	0	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0023	2011	2	1	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0024	2011	2	0	0	0	0	2	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0025	2011	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0026	2011	2	0	2	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0027	2011	2	0	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0028	2011	2	0	1	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0029	2011	2	0	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0030	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0031	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0032	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0033	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0034	2011	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0035	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0036	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0037	2011	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0038	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0039	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0040	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0041	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778