JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTCL1_chr18_8700556_8837778	0/0	a0042	2011	1	0	0	0	1	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0043	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0044	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0045	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0046	2011	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0047	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0048	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0049	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0050	2011	1	0	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0051	2011	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0052	2011	1	0	0	0	1	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0053	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0054	2011	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0055	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0056	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0057	2011	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0058	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0059	2011	1	0	0	0	1	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0060	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0061	2011	1	0	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0062	2011	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0063	2011	1	0	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0064	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0065	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0066	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	a0067	2011	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCP1_chrX_155059034_155076136	1/1	a0001	107	296	72	55	122	13	32	copy fasta	MTCP1	chrX	155059034	155076136
MTCP1_chrX_155059034_155076136	0/0	a0002	107	1	0	1	0	0	0	copy fasta	MTCP1	chrX	155059034	155076136
MTDH_chr8_97639184_97735260	1/1	a0001	582	355	87	55	168	6	37	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	a0002	582	5	4	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	a0003	582	5	0	3	0	0	2	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	a0004	582	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	a0005	582	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	a0006	582	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	a0007	582	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	a0008	582	1	0	0	0	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTERF1_chr7_91865929_91885702	1/0	a0001	399	231	63	41	102	7	17	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/1	a0002	399	192	22	34	107	6	22	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	a0003	399	5	5	0	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	a0004	399	3	0	0	0	1	2	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	a0005	399	3	2	1	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	a0006	399	2	2	0	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	a0007	399	2	0	0	2	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	a0008	399	1	0	0	0	0	1	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	a0009	399	1	0	0	1	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF2_chr12_106972277_106992146	1/1	a0001	385	432	76	78	215	16	45	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	a0002	385	9	7	1	0	0	1	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	a0003	385	6	5	1	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	a0004	385	5	5	0	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	a0005	385	3	1	2	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146