JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTERF2_chr12_106972277_106992146	0/0	a0006	385	1	0	0	1	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF3_chr8_96234402_96266610	1/1	a0001	417	271	60	54	116	5	34	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	a0002	417	14	13	1	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	a0003	417	2	2	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	a0004	417	2	2	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	a0005	417	1	1	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	a0006	417	1	1	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	a0007	417	1	1	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	a0008	417	1	0	0	0	1	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	a0009	417	1	0	1	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF4_chr2_241090571_241107287	1/1	a0001	381	271	52	44	126	10	37	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0002	381	48	12	9	23	1	3	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0003	381	46	0	7	36	1	2	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0004	380	9	9	0	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0005	381	7	7	0	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0006	378	5	5	0	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0007	380	5	4	1	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0008	381	4	3	1	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0009	381	1	0	0	1	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0010	381	1	0	0	1	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	a0011	381	1	0	0	1	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTF1_chr1_37804574_37864592	1/1	a0001	753	368	76	64	172	14	40	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	a0002	753	4	4	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	a0003	753	2	2	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	a0004	753	1	0	1	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	a0005	753	1	0	1	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF2_chr1_93074283_93144076	1/1	a0001	593	336	88	63	139	14	30	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	a0002	593	3	0	0	3	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	a0003	593	1	0	1	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTFMT_chr15_64996512_65034639	1/1	a0001	389	287	78	63	104	12	28	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0002	389	22	14	0	4	2	2	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0003	389	5	0	0	2	0	3	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0004	389	4	4	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0005	389	2	2	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0006	389	2	0	0	2	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0007	389	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0008	389	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0009	389	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0010	389	1	0	0	0	0	1	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0011	389	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	a0012	389	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFP1_chr22_30420768_30434054	1/1	a0001	166	440	95	83	194	18	48	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	a0002	19	1	1	0	0	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	a0003	166	1	0	0	1	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	a0004	166	1	0	1	0	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	a0005	166	1	0	0	1	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFR1L_chr1_25814954_25837938	1/1	a0001	292	387	84	74	177	14	36	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	a0002	292	7	7	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	a0003	292	6	6	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	a0004	292	1	1	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938