Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AP1S2_chrX_15820806_15859813	1/1	a0001	160	318	70	54	153	9	30	copy fasta	AP1S2	chrX	15820806	15859813
AP1S3_chr2_223750326_223842582	1/1	a0001	154	334	82	52	156	6	36	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	a0002	154	3	3	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	a0003	154	1	0	1	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	a0004	154	1	0	1	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	a0005	154	1	1	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP2A1_chr19_49762001_49812114	1/1	a0001	955	341	82	64	133	14	46	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	a0002	955	1	0	0	1	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A2_chr11_920870_1017240	1/1	a0001	939	264	69	52	98	12	31	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	a0002	939	1	0	0	0	0	1	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	a0003	939	1	1	0	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	a0004	650	1	0	0	1	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	a0005	939	1	0	0	1	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2B1_chr17_35582322_35731413	1/1	a0001	951	371	86	64	171	14	34	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	a0002	951	1	0	0	1	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2M1_chr3_184169855_184189091	1/1	a0001	435	422	92	74	192	14	48	copy fasta	AP2M1	chr3	184169855	184189091
AP2S1_chr19_46833167_46855846	1/1	a0001	142	424	98	80	178	18	48	copy fasta	AP2S1	chr19	46833167	46855846
AP3B1_chr5_77997326_78299698	0/1	a0001	1094	171	42	42	59	7	20	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	1/0	a0002	1094	37	3	2	24	1	6	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	a0003	1093	12	12	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	a0004	1094	1	0	1	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	a0005	1094	1	0	1	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	a0006	1094	1	1	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	a0007	1094	1	1	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	a0008	1094	1	1	0	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	a0009	1094	1	0	0	1	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B2_chr15_82654281_82714875	1/1	a0001	1101	352	84	64	153	18	31	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	a0002	1099	6	0	0	6	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	a0003	1101	5	0	0	5	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	a0004	1101	2	2	0	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	a0005	1101	1	0	0	0	0	1	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	a0006	1101	1	0	0	1	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	a0007	1101	1	0	0	1	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3D1_chr19_2095988_2156566	1/1	a0001	1215	387	91	68	174	16	36	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	a0002	1215	15	6	1	0	2	6	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	a0003	1215	1	1	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	a0004	1215	1	0	0	1	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	a0005	1215	1	0	1	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	a0006	1215	1	0	0	1	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3M1_chr10_74115255_74155828	1/1	a0001	418	334	86	56	148	12	30	copy fasta	AP3M1	chr10	74115255	74155828
AP3M2_chr8_42148063_42176183	1/1	a0001	418	391	86	72	183	14	34	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	a0002	418	1	0	0	1	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3S1_chr5_115836935_115919081	1/1	a0001	193	376	88	72	158	14	42	copy fasta	AP3S1	chr5	115836935	115919081
AP3S1_chr5_115836935_115919081	0/0	a0002	193	2	2	0	0	0	0	copy fasta	AP3S1	chr5	115836935	115919081
AP3S2_chr15_89825599_89898994	1/1	a0001	193	308	76	72	112	14	32	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	a0002	193	3	3	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	a0003	193	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP4B1_chr1_113889194_113909799	1/1	a0001	739	283	11	54	173	13	30	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	a0002	739	137	71	23	27	2	14	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	a0003	739	4	4	0	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799