JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTFR1L_chr1_25814954_25837938	0/0	a0005	292	1	0	0	1	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1_chr8_65639734_65715562	1/1	a0001	333	347	84	72	139	14	36	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	a0002	164	1	0	0	1	0	0	copy fasta	MTFR1	chr8	65639734	65715562
MTFR2_chr6_136226034_136255311	1/1	a0001	385	374	58	73	197	16	28	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	a0002	385	24	23	1	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	a0003	385	8	6	2	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	a0004	385	4	4	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	a0005	385	3	3	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	a0006	385	1	0	0	1	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	a0007	212	1	0	0	1	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	a0008	385	1	0	0	1	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	a0009	385	1	1	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	a0010	385	1	1	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTG1_chr10_133389157_133427520	0/1	a0001	334	424	92	79	196	18	38	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	a0002	334	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	1/0	a0003	334	1	0	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	a0004	334	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	a0005	334	1	0	1	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG2_chr20_62178028_62208568	1/1	a0001	406	350	74	62	164	12	36	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0002	406	43	18	10	8	3	4	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0003	406	5	0	5	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0004	406	3	0	2	0	1	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0005	406	2	0	0	0	0	2	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0006	406	2	0	0	0	2	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0007	406	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0008	406	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0009	406	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0010	406	1	0	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0011	406	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0012	406	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	a0013	406	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTHFD1L_chr6_150860702_151106887	1/1	a0001	978	216	85	47	44	9	29	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	a0002	978	4	4	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	a0003	978	1	1	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	a0004	978	1	0	0	0	1	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	a0005	978	1	0	0	0	0	1	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	a0006	978	1	0	0	1	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	a0007	978	1	0	0	1	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	a0008	978	1	0	1	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1_chr14_64383353_64465025	0/1	a0001	935	170	44	25	76	5	19	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	a0002	935	88	13	25	29	6	15	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	1/0	a0003	935	55	5	3	43	1	2	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	a0004	935	11	10	1	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	a0005	935	5	5	0	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	a0006	935	5	5	0	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	a0007	935	2	1	0	1	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	a0008	935	2	0	0	0	0	2	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	a0009	935	2	2	0	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	a0010	935	1	1	0	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	a0011	935	1	0	0	1	0	0	copy fasta	MTHFD1	chr14	64383353	64465025