JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTHFD2L_chr4_74153118_74308099	1/1	a0001	347	199	74	32	71	2	18	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	a0002	347	1	0	0	1	0	0	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2_chr2_74193615_74222565	1/1	a0001	350	412	93	74	196	10	37	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	a0002	350	1	1	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	a0003	350	1	0	0	0	0	1	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFR_chr1_11780723_11810964	1/0	a0001	656	175	67	27	58	5	17	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0002	656	94	6	29	49	2	8	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/1	a0003	656	69	15	9	23	5	16	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0004	656	27	0	3	22	0	2	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0005	656	2	2	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0006	656	1	0	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0007	656	1	0	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0008	656	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0009	656	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0010	656	1	0	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0011	656	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0012	656	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0013	656	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	a0014	656	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFSD_chr16_86525186_86560235	0/0	a0001	383	149	46	24	51	10	18	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0002	383	105	28	21	48	2	6	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/1	a0003	383	71	1	9	47	2	11	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	1/0	a0004	383	59	8	12	30	2	6	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0005	383	5	5	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0006	383	5	1	3	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0007	383	3	2	1	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0008	383	2	2	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0009	383	2	0	0	2	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0010	383	2	0	0	1	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0011	383	1	0	0	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0012	383	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0013	383	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0014	383	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	a0015	383	1	1	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFS_chr15_79838547_79902014	1/1	a0001	203	374	87	59	167	13	46	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	a0002	203	17	6	4	4	3	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	a0003	203	1	0	1	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	a0004	203	1	0	0	1	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	a0005	203	1	1	0	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTIF2_chr2_55231595_55274231	0/0	a0001	727	213	36	58	88	8	23	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	1/1	a0002	727	150	41	19	67	6	15	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	a0003	727	9	0	0	9	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	a0004	197	4	2	1	1	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	a0005	727	4	4	0	0	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	a0006	197	2	0	0	2	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	a0007	727	1	1	0	0	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	a0008	727	1	0	0	1	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF3_chr13_27430643_27455564	0/1	a0001	278	314	87	54	122	9	41	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	1/0	a0002	278	97	12	17	59	3	5	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	0/0	a0003	278	2	1	1	0	0	0	copy fasta	MTIF3	chr13	27430643	27455564