JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTIF3_chr13_27430643_27455564	0/0	a0004	278	1	0	0	1	0	0	copy fasta	MTIF3	chr13	27430643	27455564
MTLN_chr2_110206529_110217547	1/1	a0001	56	396	84	76	174	18	42	copy fasta	MTLN	chr2	110206529	110217547
MTM1_chrX_150563621_150678143	1/1	a0001	603	275	69	49	114	9	32	copy fasta	MTM1	chrX	150563621	150678143
MTM1_chrX_150563621_150678143	0/0	a0002	534	1	0	0	1	0	0	copy fasta	MTM1	chrX	150563621	150678143
MTM1_chrX_150563621_150678143	0/0	a0003	42	1	1	0	0	0	0	copy fasta	MTM1	chrX	150563621	150678143
MTMR10_chr15_30933941_30996628	0/0	a0001	777	215	68	50	63	8	26	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/1	a0002	777	53	19	10	12	4	7	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	a0003	777	2	2	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	a0004	777	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	a0005	777	1	0	0	0	0	1	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	a0006	749	1	0	0	1	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	a0007	777	1	0	0	1	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	a0008	777	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	a0009	777	1	0	0	1	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	a0010	777	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR11_chr1_149923651_149941879	1/0	a0001	709	273	71	37	133	10	21	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/1	a0002	709	76	2	15	39	6	13	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	a0003	709	11	11	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	a0004	709	8	0	8	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	a0005	709	7	7	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	a0006	709	2	2	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	a0007	709	1	0	0	1	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	a0008	709	1	0	0	0	0	1	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	a0009	709	1	0	0	1	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	a0010	709	1	0	0	0	0	1	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	a0011	709	1	1	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR12_chr5_32222007_32317939	1/1	a0001	747	349	78	54	158	14	43	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	a0002	747	7	7	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	a0003	747	3	3	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	a0004	747	2	0	1	0	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	a0005	747	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	a0006	747	1	0	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	a0007	747	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR14_chr3_9644505_9707393	1/1	a0001	650	261	87	68	60	12	32	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	a0002	650	1	1	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR1_chrX_150688396_150770108	0/0	a0000	0	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	1/1	a0001	673	264	72	43	107	9	31	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	a0002	674	1	1	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	a0003	673	1	0	0	0	0	1	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	a0004	673	1	1	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	a0005	67	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	a0006	670	1	0	1	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR2_chr11_95827880_95929107	1/0	a0001	643	216	69	42	79	4	21	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/1	a0002	643	91	8	13	59	4	6	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	a0003	643	10	6	0	0	0	4	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	a0004	643	6	6	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	a0005	643	5	0	0	5	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	a0006	643	3	3	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	a0007	643	2	0	0	0	0	2	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	a0008	643	2	0	1	0	0	1	copy fasta	MTMR2	chr11	95827880	95929107