JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTMR2_chr11_95827880_95929107	0/0	a0009	643	1	0	0	1	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	a0010	643	1	0	0	0	0	1	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	a0011	643	1	0	0	0	0	1	copy fasta	MTMR2	chr11	95827880	95929107
MTMR3_chr22_29878174_30035868	1/1	a0001	1198	309	76	65	118	17	31	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	a0002	1198	11	4	5	1	1	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	a0003	1198	6	5	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	a0004	1198	3	3	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	a0005	1198	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	a0006	1198	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	a0007	1198	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	a0008	1198	1	0	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	a0009	1198	1	0	0	0	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR4_chr17_58484537_58519638	0/1	a0001	1209	131	22	31	64	2	11	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	a0002	1209	114	41	9	42	4	18	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	1/0	a0003	1209	95	21	26	32	6	9	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	a0004	1209	2	0	0	2	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	a0005	1209	1	1	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	a0006	1209	1	0	0	1	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	a0007	1209	1	1	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	a0008	1209	1	1	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	a0009	1209	1	1	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	a0010	1209	1	0	0	1	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR6_chr13_25241222_25292488	1/0	a0001	621	181	68	26	68	0	18	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/1	a0002	621	112	8	26	61	6	10	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	a0003	621	23	2	6	10	2	3	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	a0004	621	15	0	1	13	0	1	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	a0005	621	8	8	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	a0006	621	3	0	0	3	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	a0007	621	2	2	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	a0008	621	1	0	1	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	a0009	621	1	0	0	1	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR7_chr8_17291794_17418351	0/1	a0001	660	314	86	61	113	16	37	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	a0002	660	36	0	11	17	2	6	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	1/0	a0003	660	5	4	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	a0004	660	4	0	0	4	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	a0005	660	1	0	0	0	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR8_chrX_64263081_64400452	1/1	a0001	704	187	65	33	66	5	16	copy fasta	MTMR8	chrX	64263081	64400452
MTMR8_chrX_64263081_64400452	0/0	a0002	704	1	0	0	1	0	0	copy fasta	MTMR8	chrX	64263081	64400452
MTMR8_chrX_64263081_64400452	0/0	a0003	704	1	1	0	0	0	0	copy fasta	MTMR8	chrX	64263081	64400452
MTMR8_chrX_64263081_64400452	0/0	a0004	334	1	0	0	1	0	0	copy fasta	MTMR8	chrX	64263081	64400452
MTMR9_chr8_11279816_11333146	1/1	a0001	549	336	88	64	132	12	38	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	a0002	549	4	3	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	a0003	549	2	0	2	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	a0004	549	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	a0005	549	1	0	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	a0006	549	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	a0007	549	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	a0008	549	1	0	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	a0009	549	1	0	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTNR1A_chr4_186528655_186560567	1/1	a0001	350	360	82	73	157	11	35	copy fasta	MTNR1A	chr4	186528655	186560567