JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTNR1A_chr4_186528655_186560567	0/0	a0002	350	9	0	0	9	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0003	350	7	7	0	0	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0004	350	7	0	0	7	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0005	350	5	2	2	0	0	1	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0006	350	2	0	0	0	0	2	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0007	350	1	0	0	0	1	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0008	350	1	0	1	0	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0009	350	1	0	0	0	0	1	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0010	350	1	0	0	0	0	1	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0011	350	1	0	0	1	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	a0012	350	1	1	0	0	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1B_chr11_92964651_92987782	1/0	a0001	362	356	66	60	172	15	42	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/1	a0002	362	21	9	6	0	2	3	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	a0003	362	18	16	2	0	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	a0004	362	2	0	0	0	0	2	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	a0005	362	1	0	0	0	0	1	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	a0006	362	1	0	0	0	1	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	a0007	362	1	1	0	0	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	a0008	362	1	0	0	1	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	a0009	362	1	0	0	1	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTO1_chr6_73456737_73514236	1/1	a0001	692	391	87	72	183	18	29	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	a0002	692	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	a0003	692	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	a0004	692	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	a0005	692	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	a0006	692	1	0	0	0	0	1	copy fasta	MTO1	chr6	73456737	73514236
MTOR_chr1_11101535_11267551	1/1	a0001	2549	250	88	46	73	8	33	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	a0002	2549	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	a0003	2549	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	a0004	2549	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	a0005	2549	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	a0006	2549	1	0	0	0	0	1	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	a0007	2549	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTPAP_chr10_30304801_30354278	1/0	a0001	582	249	60	46	104	12	26	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/1	a0002	582	85	10	12	48	6	8	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	a0003	582	19	17	2	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	a0004	582	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	a0005	582	1	0	0	0	0	1	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	a0006	582	1	0	0	0	0	1	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	a0007	582	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	a0008	582	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPN_chr7_135921760_135982359	1/1	a0001	118	386	84	56	190	14	40	copy fasta	MTPN	chr7	135921760	135982359
MTRES1_chr6_107023199_107056586	1/1	a0001	240	401	90	86	164	18	41	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	a0002	240	2	2	0	0	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	a0003	233	1	0	0	1	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	a0004	240	1	0	0	0	0	1	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	a0005	240	1	0	0	1	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTREX_chr5_55302989_55430579	1/1	a0001	1042	315	78	48	147	12	28	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	a0002	1042	1	0	0	1	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	a0003	1042	1	1	0	0	0	0	copy fasta	MTREX	chr5	55302989	55430579