JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTREX_chr5_55302989_55430579	0/0	a0004	1042	1	0	0	1	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	a0005	1042	1	1	0	0	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	a0006	1042	1	0	0	1	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTRF1L_chr6_152982362_153007709	0/0	a0001	380	191	33	37	96	6	19	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	1/0	a0002	380	182	34	26	96	6	19	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	a0003	380	90	27	17	31	4	11	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	a0004	380	2	2	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	a0005	380	1	0	0	0	0	1	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	a0006	380	1	0	0	1	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1_chr13_41211369_41268576	1/1	a0001	445	309	71	46	157	9	24	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	a0002	445	10	5	4	0	1	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	a0003	445	5	5	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	a0004	445	4	2	2	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	a0005	445	2	2	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	a0006	445	1	0	0	1	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	a0007	445	1	1	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRFR_chr12_123228436_123262960	1/1	a0001	166	306	80	68	102	16	38	copy fasta	MTRFR	chr12	123228436	123262960
MTRR_chr5_7864148_7906113	1/1	a0001	698	95	5	10	67	1	10	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0002	698	84	32	19	28	1	4	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0003	698	80	4	12	49	4	11	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0004	698	42	7	9	9	5	12	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0005	698	35	1	6	27	0	1	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0006	698	33	16	8	4	2	3	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0007	698	23	1	6	15	0	1	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0008	698	12	4	1	6	1	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0009	698	10	9	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0010	698	3	3	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0011	698	3	3	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0012	698	2	2	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0013	698	2	2	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0014	698	1	0	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0015	698	1	0	0	1	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0016	698	1	0	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	a0017	698	1	1	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTR_chr1_236790292_236908981	1/1	a0001	1265	253	49	50	125	8	19	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0002	1265	94	19	17	35	6	17	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0003	1265	8	8	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0004	1265	5	5	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0005	1265	4	0	3	0	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0006	1265	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0007	1265	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0008	1265	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0009	1265	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0010	1265	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0011	1265	1	0	0	0	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0012	1265	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	a0013	1265	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTSS1_chr8_124545784_124733473	1/1	a0001	755	234	76	38	87	8	23	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	a0002	755	44	12	8	16	2	6	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	a0003	755	2	2	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473