JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTSS1_chr8_124545784_124733473	0/0	a0004	755	2	0	0	0	0	2	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	a0005	755	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	a0006	755	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	a0007	755	1	0	0	0	0	1	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	a0008	755	1	0	0	1	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS2_chr16_70656204_70691053	1/1	a0001	747	371	79	76	162	15	37	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0002	747	8	8	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0003	689	6	0	2	4	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0004	747	3	3	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0005	747	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0006	747	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0007	747	1	0	0	0	1	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0008	747	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0009	689	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0010	747	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0011	747	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0012	747	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0013	747	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	a0014	747	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTTP_chr4_99569824_99628997	0/0	a0001	894	101	26	8	62	0	5	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	1/1	a0002	894	80	6	21	32	6	13	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0003	894	66	12	5	48	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0004	894	43	5	5	28	0	5	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0005	894	21	18	1	0	0	2	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0006	894	18	6	6	1	0	5	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0007	894	9	4	5	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0008	894	4	4	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0009	894	3	3	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0010	894	3	3	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0011	894	3	0	1	1	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0012	894	3	0	3	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0013	894	2	2	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0014	894	2	2	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0015	894	1	0	0	0	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0016	894	1	0	0	1	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0017	894	1	0	1	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0018	894	1	0	0	1	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0019	894	1	1	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	a0020	894	1	0	0	0	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTURN_chr7_30129986_30167762	1/1	a0001	131	425	98	80	189	14	42	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	a0002	131	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTUS1_chr8_17638802_17806094	0/0	a0001	1270	170	37	36	70	6	21	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	1/1	a0002	1270	51	13	8	19	3	6	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0003	1270	32	6	2	24	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0004	1270	11	9	0	2	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0005	1270	7	1	4	0	1	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0006	1270	5	5	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0007	1270	5	5	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0008	1216	4	1	2	0	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0009	1270	4	0	2	2	0	0	copy fasta	MTUS1	chr8	17638802	17806094