JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTUS1_chr8_17638802_17806094	0/0	a0010	1270	3	3	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0011	1270	3	0	2	0	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0012	1270	3	0	0	0	0	3	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0013	1270	2	2	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0014	1270	2	2	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0015	1270	2	0	2	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0016	1270	2	2	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0017	1270	2	0	0	0	0	2	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0018	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0019	1270	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0020	1270	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0021	1270	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0022	1270	1	0	0	0	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0023	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0024	1216	1	0	0	0	1	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0025	1270	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0026	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0027	1270	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0028	1270	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0029	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0030	1270	1	0	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0031	1270	1	0	0	0	1	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0032	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0033	1270	1	0	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0034	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0035	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0036	1270	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0037	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0038	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	a0039	1270	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS2_chr13_28815339_29510947	0/1	a0001	1369	38	15	5	7	4	6	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	1/0	a0002	1369	25	18	4	1	0	1	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0003	1369	7	7	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0004	1369	5	4	0	1	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0005	1369	3	2	1	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0006	1369	3	1	0	1	1	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0007	1369	3	3	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0008	1369	1	0	0	0	0	1	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0009	1369	1	0	0	1	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0010	1369	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0011	1369	1	0	0	0	1	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0012	1369	1	0	1	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0013	1369	1	0	1	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0014	1369	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	a0015	1369	1	0	0	1	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTX1_chr1_155203695_155218823	1/1	a0001	466	248	51	46	110	13	26	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	a0002	466	99	28	16	38	5	12	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	a0003	466	3	0	3	0	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	a0004	466	1	0	1	0	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	a0005	466	1	0	0	1	0	0	copy fasta	MTX1	chr1	155203695	155218823