JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MTX1_chr1_155203695_155218823	0/0	a0006	466	1	1	0	0	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	a0007	466	1	0	0	1	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX2_chr2_176264442_176343025	1/1	a0001	263	334	93	66	133	12	28	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	a0002	263	9	0	0	9	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	a0003	263	1	0	0	1	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	a0004	263	1	1	0	0	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	a0005	263	1	0	0	1	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	a0006	263	1	0	0	1	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	a0007	263	1	0	0	1	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX3_chr5_79971716_79996262	1/1	a0001	312	373	82	64	173	12	40	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	a0002	312	41	2	4	30	1	4	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	a0003	312	25	5	10	3	1	6	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	a0004	312	4	0	0	4	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	a0005	312	2	2	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	a0006	312	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MUC12_chr7_100964565_101023936	0/0	a0001	10044	9	0	0	8	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0002	7917	8	0	4	4	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0003	7917	7	0	0	7	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0004	4668	5	5	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0005	10083	4	0	0	4	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0006	7917	3	0	0	3	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0007	4668	3	0	0	0	0	3	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0008	8961	3	0	0	3	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0009	11127	3	0	3	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0010	11166	3	0	3	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0011	10441	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0012	8961	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0013	6834	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0014	7917	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0015	9000	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0016	9000	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0017	7917	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0018	7917	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0019	9358	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0020	11813	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0021	11813	2	0	0	1	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0022	9647	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0023	11813	2	0	0	0	0	2	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0024	8961	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0025	14376	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0026	10044	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0027	8961	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0028	8961	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0029	12210	2	0	0	0	0	2	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0030	10044	2	1	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0031	11127	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0032	11127	2	0	0	0	0	2	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0033	13332	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0034	12249	2	0	0	0	1	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0035	9000	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936