Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AP4B1_chr1_113889194_113909799	0/0	a0004	739	3	0	0	3	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	a0005	739	1	0	0	0	1	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	a0006	739	1	1	0	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	a0007	739	1	0	0	1	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	a0008	739	1	1	0	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	a0009	739	1	0	0	1	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	a0010	739	1	0	1	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	a0011	739	1	0	0	1	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4E1_chr15_50903683_51010895	1/1	a0001	1137	192	59	41	62	6	22	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0002	1137	183	19	32	108	8	16	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0003	1137	6	6	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0004	1137	3	0	0	3	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0005	1137	2	2	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0006	1137	1	0	0	1	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0007	1137	1	1	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0008	1137	1	0	1	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0009	1137	1	0	0	1	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0010	1137	1	1	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	a0011	1137	1	0	0	1	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4M1_chr7_100096643_100114039	1/1	a0001	453	405	90	61	190	14	48	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	a0002	453	11	0	7	0	4	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4S1_chr14_31020649_31101450	1/1	a0001	144	346	82	56	152	12	42	copy fasta	AP4S1	chr14	31020649	31101450
AP5B1_chr11_65768898_65785976	1/0	a0001	878	256	38	51	124	15	27	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0002	878	75	18	6	45	1	5	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/1	a0003	878	70	25	15	27	1	1	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0004	878	10	10	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0005	878	2	0	0	2	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0006	878	1	0	0	0	1	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0007	878	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0008	878	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0009	878	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0010	878	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0011	878	1	1	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0012	873	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0013	221	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0014	878	1	0	0	0	0	1	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0015	878	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	a0016	878	1	0	0	1	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5M1_chr14_57263971_57303742	1/1	a0001	490	240	54	43	111	10	20	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	a0002	490	16	12	4	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	a0003	490	11	11	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	a0004	490	5	5	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	a0005	490	3	0	3	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	a0006	490	2	2	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	a0007	490	2	2	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	a0008	490	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5S1_chr20_3815547_3833838	1/1	a0001	200	405	92	68	177	18	48	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	a0002	200	3	2	1	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	a0003	200	1	0	1	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	a0004	200	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838