JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC12_chr7_100964565_101023936	0/0	a0086	15351	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0087	9647	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0088	10044	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0089	8961	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0090	5332	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0091	14773	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0092	10441	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0093	8961	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0094	12607	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0095	10441	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0096	15748	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0097	10044	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0098	11127	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0099	13582	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0100	11813	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0101	11813	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0102	11813	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0103	10730	1	0	0	0	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0104	11813	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0105	11813	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0106	11813	1	0	0	0	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0107	13582	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0108	11813	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0109	11813	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0110	11813	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0111	11813	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0112	11813	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0113	11813	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0114	13582	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0115	11127	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0116	11813	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0117	11813	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0118	15748	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0119	16939	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0120	14376	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0121	17625	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0122	13293	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0123	13293	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0124	14376	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0125	13293	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0126	15459	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0127	17228	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0128	7192	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0129	5026	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0130	10441	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0131	11524	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0132	8275	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0133	9358	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0134	8961	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0135	10044	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936