JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC12_chr7_100964565_101023936	0/0	a0236	10083	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0237	10083	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0238	10083	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0239	10083	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0240	11891	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0241	10083	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0242	10083	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0243	11166	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0244	7582	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0245	7917	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0246	9000	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0247	10083	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0248	2986	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0249	9000	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0250	10083	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0251	9000	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/1	a0252	8079	1	0	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0253	8079	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0254	8079	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0255	8079	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0256	10083	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0257	10044	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0258	10083	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0259	11166	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0260	11166	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0261	13332	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0262	14415	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0263	13332	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0264	13332	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0265	14415	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0266	13332	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0267	11166	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0268	12249	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0269	11166	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0270	11166	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0271	14415	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	a0272	12249	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC13_chr3_124900442_124939751	1/0	a0001	512	200	34	25	115	8	17	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0002	512	106	24	19	51	5	7	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/1	a0003	512	80	15	20	28	1	15	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0004	512	32	0	13	12	2	5	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0005	512	17	14	3	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0006	511	4	4	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0007	512	4	1	3	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0008	512	3	1	1	0	0	1	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0009	511	1	1	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0010	512	1	0	0	1	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0011	512	1	0	0	1	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0012	512	1	1	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	a0013	512	1	1	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751