JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC13_chr3_124900442_124939751	0/0	a0014	504	1	0	0	0	0	1	copy fasta	MUC13	chr3	124900442	124939751
MUC15_chr11_26554032_26577263	1/0	a0001	361	225	48	14	133	5	24	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/1	a0002	361	211	41	63	76	10	20	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0003	361	7	5	2	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0004	361	7	0	0	7	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0005	361	6	0	0	6	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0006	361	2	0	0	2	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0007	361	2	1	0	0	1	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0008	361	2	2	0	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0009	361	1	0	1	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0010	361	1	0	0	0	0	1	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0011	361	1	1	0	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	a0012	361	1	0	0	0	0	1	copy fasta	MUC15	chr11	26554032	26577263
MUC17_chr7_101015081_101063859	0/0	a0001	4493	66	10	22	27	3	4	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0002	4493	41	2	8	22	2	7	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0003	4493	40	5	12	11	4	8	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0004	5319	22	1	0	12	0	9	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0005	4493	17	0	2	14	0	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0006	5319	16	0	0	16	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0007	4493	11	1	0	8	1	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0008	4493	11	0	0	11	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0009	5437	10	3	2	4	0	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0010	5437	8	6	1	1	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0011	5437	7	7	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0012	4493	6	6	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	1/1	a0013	4493	5	0	3	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0014	4493	5	5	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0015	4493	5	0	4	0	1	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0016	4493	4	4	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0017	4493	3	2	1	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0018	4493	3	3	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0019	3962	3	0	3	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0020	5378	3	3	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0021	5319	2	0	0	0	0	2	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0022	5319	2	0	0	2	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0023	5319	2	2	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0024	5319	2	2	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0025	4493	2	2	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0026	4493	2	2	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0027	4493	2	0	0	0	0	2	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0028	4493	2	2	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0029	4493	2	2	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0030	4493	2	0	2	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0031	5437	2	2	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0032	5319	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0033	5319	1	0	0	1	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0034	5319	1	0	0	1	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0035	5319	1	0	0	1	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0036	5319	1	0	0	1	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0037	5319	1	0	0	0	0	1	copy fasta	MUC17	chr7	101015081	101063859