JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC17_chr7_101015081_101063859	0/0	a0088	4493	1	0	0	1	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	a0089	4493	1	0	1	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC20_chr3_195715978_195738551	0/0	a0000	0	31	1	3	25	0	2	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/1	a0001	538	41	2	7	27	1	3	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0002	538	12	0	1	11	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0003	538	8	7	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0004	538	8	0	4	0	0	4	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0005	595	7	0	0	7	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0006	519	6	0	3	3	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0007	382	5	0	2	2	1	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0008	557	4	0	0	4	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0009	595	4	0	3	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0010	576	3	0	1	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0011	557	3	2	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0012	537	2	1	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0013	556	2	1	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0014	538	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0015	595	2	0	2	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0016	557	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0017	538	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0018	538	2	0	2	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0019	519	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0020	595	2	2	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0021	538	2	2	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0022	537	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0023	537	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0024	518	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0025	519	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0026	576	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0027	574	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0028	557	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0029	557	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0030	557	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0031	447	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0032	538	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0033	538	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0034	538	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0035	538	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0036	346	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0037	576	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0038	557	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0039	538	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0040	538	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0041	538	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0042	766	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0043	614	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0044	595	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0045	538	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0046	557	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0047	538	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551