JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC20_chr3_195715978_195738551	0/0	a0048	557	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0049	576	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0050	555	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0051	536	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0052	652	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0053	557	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	a0054	595	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC21_chr6_30978718_30994903	0/0	a0001	566	162	42	31	68	7	14	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0002	566	115	9	11	72	4	19	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0003	626	53	2	13	30	2	6	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0004	566	39	2	9	25	1	2	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0005	566	29	11	5	8	2	3	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0006	596	26	17	7	0	2	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0007	506	5	1	3	1	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0008	566	5	5	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0009	626	3	0	0	0	0	3	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0010	566	2	0	0	2	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0011	566	2	2	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0012	551	1	1	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0013	566	1	1	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0014	566	1	0	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0015	566	1	1	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0016	566	1	0	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0017	566	1	0	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	a0018	566	1	0	0	0	0	1	copy fasta	MUC21	chr6	30978718	30994903
MUC22_chr6_31005474_31040402	0/0	a0000	0	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0001	1773	32	1	9	18	2	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0002	1772	27	0	1	26	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0003	1773	24	15	6	0	2	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0004	1773	24	0	0	22	0	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0005	1773	21	0	6	9	1	5	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0006	674	20	1	0	19	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0007	1495	17	1	8	6	2	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0008	1153	16	0	0	16	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0009	1773	15	0	2	12	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0010	1763	10	2	0	6	0	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0011	674	8	8	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0012	1773	8	0	1	7	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0013	1773	7	0	5	0	1	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0014	1773	6	5	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0015	1773	6	1	5	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0016	1783	5	0	0	2	1	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0017	1773	5	1	4	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0018	1773	5	1	4	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0019	1773	5	2	0	0	0	3	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0020	1773	5	0	0	5	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0021	1773	5	0	0	3	0	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0022	674	4	0	0	4	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0023	1773	4	1	1	0	0	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0024	1773	4	0	0	2	1	1	copy fasta	MUC22	chr6	31005474	31040402