JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC22_chr6_31005474_31040402	0/0	a0025	1773	4	0	3	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0026	1773	4	0	0	0	0	4	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0027	1773	4	4	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0028	1763	4	0	2	1	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0029	1773	4	0	0	4	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0030	1773	4	0	1	3	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0031	1772	3	0	0	3	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/1	a0032	1783	3	0	0	1	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0033	1772	3	0	0	3	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0034	1143	3	2	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0035	1773	3	0	0	0	0	3	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0036	1698	3	2	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0037	1773	3	1	2	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0038	1773	3	1	0	2	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0039	1773	3	0	0	0	0	3	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0040	1773	3	0	0	3	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0041	1773	3	0	0	3	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0042	1773	3	0	0	2	1	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0043	1772	2	0	1	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0044	1773	2	0	0	2	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0045	674	2	0	0	2	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0046	1772	2	0	0	0	2	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0047	1773	2	0	0	2	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0048	1772	2	0	0	2	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0049	1773	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0050	1495	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0051	1495	2	0	0	2	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0052	1773	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0053	1773	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0054	1773	2	0	0	2	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0055	1773	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0056	1773	2	0	2	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0057	1773	2	0	1	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0058	1495	2	0	1	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0059	1773	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0060	1783	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0061	1773	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0062	1698	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0063	1783	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0064	1773	2	0	2	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0065	1792	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0066	1773	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0067	1783	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0068	1772	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0069	1772	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0070	1783	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0071	1773	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0072	1772	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0073	1783	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	a0074	1773	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402