Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AP5S1_chr20_3815547_3833838	0/0	a0005	200	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	a0006	200	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5Z1_chr7_4770623_4799397	1/1	a0001	807	258	62	52	99	12	31	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0002	807	31	2	2	14	0	13	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0003	803	19	17	2	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0004	807	4	0	3	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0005	807	3	3	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0006	807	3	0	0	3	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0007	803	3	2	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0008	807	2	0	1	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0009	807	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0010	807	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0011	803	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0012	807	1	0	0	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0013	807	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0014	807	1	0	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0015	803	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0016	807	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0017	807	1	0	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0018	807	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0019	807	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0020	807	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0021	807	1	0	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	a0022	807	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
APAF1_chr12_98640290_98740433	1/1	a0001	1248	355	84	57	153	12	47	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	a0002	1248	2	2	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	a0003	1248	2	2	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	a0004	1248	2	0	0	2	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	a0005	1248	1	0	0	1	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	a0006	1248	1	0	0	0	0	1	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	a0007	1248	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	a0008	1248	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	a0009	1248	1	0	1	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APBA1_chr9_69422532_69677371	1/1	a0001	837	159	56	30	39	6	26	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	a0002	837	49	28	4	13	0	4	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	a0003	837	1	0	0	1	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	a0004	837	1	0	0	1	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA2_chr15_28880974_29123315	1/1	a0001	749	111	24	20	47	1	17	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	a0002	749	89	62	12	9	1	5	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	a0003	749	2	0	0	2	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	a0004	749	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	a0005	749	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA3_chr19_3745772_3766692	0/1	a0001	575	234	23	51	118	14	27	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	1/0	a0002	575	160	37	25	74	4	19	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0003	575	10	10	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0004	575	8	8	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0005	575	5	2	3	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0006	7	3	0	0	3	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0007	575	3	0	1	2	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0008	575	3	2	1	0	0	0	copy fasta	APBA3	chr19	3745772	3766692