JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC4_chr3_195741771_195816929	0/0	a0088	5689	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0089	5705	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0090	5545	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0091	5689	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0092	5673	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0093	6345	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0094	7689	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0095	126	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0096	6777	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0097	5994	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0098	7722	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0099	7674	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0100	7674	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0101	7882	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0102	7882	1	0	0	0	1	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0103	5305	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0104	3025	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0105	4938	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0106	2881	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0107	4809	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0108	7946	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0109	5273	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0110	7722	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0111	7658	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0112	2353	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0113	7738	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0114	7770	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0115	7770	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0116	7818	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0117	2257	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0118	7706	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0119	5162	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0120	7594	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0121	7610	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0122	7690	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0123	7594	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0124	2353	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0125	7722	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0126	7722	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0127	7962	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0128	7818	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0129	7818	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0130	2337	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0131	7786	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0132	7674	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0133	7802	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0134	7802	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0135	6130	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0136	3201	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	a0137	7674	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929