JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC5AC_chr11_1152953_1206138	0/1	a0001	5654	74	20	21	21	2	9	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0002	5742	45	10	14	14	0	7	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0003	5742	29	14	5	8	0	2	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0004	5654	27	0	3	23	1	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0005	6473	10	0	0	10	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0006	5662	6	1	1	0	3	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0007	5654	5	0	3	1	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0008	5742	4	0	0	4	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0009	5952	3	0	3	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0010	6325	3	3	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0011	5742	3	0	0	3	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0012	5654	3	0	0	3	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0013	5742	3	0	1	0	2	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0014	5742	3	0	2	0	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0015	5742	2	1	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0016	6325	2	0	0	0	2	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0017	5305	2	2	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0018	5654	2	1	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0019	5742	2	1	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0020	5742	2	2	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0021	5742	2	0	1	0	1	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0022	5654	2	0	1	0	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0023	5654	2	0	0	2	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0024	5654	2	0	0	0	0	2	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0025	5742	2	1	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0026	5742	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0027	6325	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0028	5305	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0029	6325	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0030	5654	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0031	5952	1	0	0	0	1	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0032	5742	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	1/0	a0033	5654	1	0	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0034	5654	1	0	0	0	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0035	5654	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0036	5742	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0037	5742	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0038	5654	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0039	5622	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0040	5742	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0041	5742	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0042	6317	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0043	5742	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0044	5742	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0045	5742	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0046	6473	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0047	5752	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0048	5742	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0049	5742	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0050	5742	1	0	0	0	0	1	copy fasta	MUC5AC	chr11	1152953	1206138