JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC5AC_chr11_1152953_1206138	0/0	a0051	5742	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0052	5742	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0053	5742	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0054	5734	1	0	0	0	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0055	5742	1	0	0	0	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0056	5369	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0057	3559	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0058	5654	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0059	5654	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0060	5654	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0061	5622	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0062	5664	1	0	0	0	1	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0063	5654	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0064	5654	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0065	5590	1	0	1	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0066	5654	1	0	0	0	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0067	5654	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0068	5686	1	0	0	0	1	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0069	5742	1	0	0	0	0	1	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0070	5742	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0071	5742	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0072	6325	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0073	5654	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0074	5654	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0075	5654	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0076	5742	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	a0077	5742	1	1	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5B_chr11_1218066_1267172	0/0	a0001	5375	30	1	13	11	0	5	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0002	5375	27	0	5	20	0	2	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0003	5375	19	2	0	17	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/1	a0004	5374	12	2	5	3	1	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0005	5375	11	1	3	0	3	4	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0006	5375	9	9	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0007	5375	9	9	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0008	5375	8	7	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0009	5375	8	0	3	2	0	3	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0010	5374	7	0	0	7	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0011	5375	6	2	1	3	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0012	5375	5	0	4	0	1	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0013	5375	5	1	0	0	0	4	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0014	5375	5	0	4	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0015	5375	4	0	0	4	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0016	5375	4	0	2	0	1	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0017	5375	4	2	2	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0018	5375	4	0	3	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0019	5375	4	0	0	4	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0020	5375	3	3	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0021	5375	3	0	1	0	0	2	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0022	5375	3	0	0	1	0	2	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0023	5375	3	0	3	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172