JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC5B_chr11_1218066_1267172	0/0	a0024	5374	3	2	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0025	5375	3	0	0	3	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0026	5375	2	0	0	2	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0027	5375	2	2	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0028	5375	2	0	0	2	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0029	5375	2	0	0	0	0	2	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0030	5375	2	1	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0031	5375	2	1	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0032	5375	2	0	0	0	0	2	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0033	5375	2	0	0	2	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0034	5375	2	2	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0035	5375	2	2	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0036	5375	2	0	1	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0037	5375	2	2	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0038	5375	2	2	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0039	5374	2	0	0	2	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0040	5375	2	1	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0041	5375	2	2	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0042	5375	2	0	0	1	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0043	5375	2	2	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0044	5375	2	0	0	2	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0045	5375	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0046	2927	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0047	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0048	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0049	5375	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0050	5375	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0051	5375	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0052	5762	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0053	5375	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0054	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0055	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0056	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0057	5375	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0058	4818	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0059	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0060	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0061	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0062	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0063	5762	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0064	5375	1	0	0	0	1	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0065	5375	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	1/0	a0066	5762	1	0	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0067	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0068	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0069	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0070	5375	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0071	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0072	5762	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0073	6632	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172