JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC5B_chr11_1218066_1267172	0/0	a0124	5374	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0125	5374	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0126	5374	1	0	0	0	1	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0127	5374	1	0	0	0	1	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0128	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0129	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0130	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0131	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0132	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0133	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0134	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0135	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0136	5375	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0137	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0138	5375	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0139	5375	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0140	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0141	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0142	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0143	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0144	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0145	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0146	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0147	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0148	5375	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0149	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0150	5370	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0151	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0152	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0153	5375	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0154	5380	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0155	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0156	5375	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	a0157	5375	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC6_chr11_1007823_1041718	0/0	a0001	5366	33	0	10	22	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0002	5926	25	0	4	13	0	8	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0003	5534	20	0	3	14	1	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0004	5366	16	3	5	6	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0005	5366	10	9	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0006	4861	10	1	6	0	2	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/1	a0007	6095	8	0	0	5	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0008	5366	7	0	3	4	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0009	5366	7	0	6	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0010	5029	7	0	0	7	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0011	6095	7	0	0	7	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0012	5194	6	3	3	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0013	5366	6	1	4	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0014	6095	6	4	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0015	5926	6	0	0	5	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0016	6656	6	0	0	6	0	0	copy fasta	MUC6	chr11	1007823	1041718