JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC6_chr11_1007823_1041718	0/0	a0017	5194	5	5	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0018	5532	5	3	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0019	5366	5	0	5	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0020	6264	5	0	3	0	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0021	6094	4	4	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0022	4861	4	0	1	0	2	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0023	5366	4	0	3	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0024	6095	4	4	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0025	6095	4	1	2	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0026	4973	3	0	2	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0027	5197	3	3	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0028	6095	3	0	0	3	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0029	5366	3	0	2	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0030	5534	3	0	0	3	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0031	5534	3	0	0	3	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0032	5020	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0033	5194	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0034	5534	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0035	5248	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0036	5366	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0037	5366	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0038	5197	2	0	0	0	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0039	5366	2	0	1	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0040	4130	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0041	5366	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0042	5366	2	0	0	1	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0043	5366	2	0	1	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0044	5366	2	0	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0045	5366	2	0	0	0	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0046	5366	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0047	5366	2	0	0	0	2	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0048	5366	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0049	5478	2	1	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0050	5926	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0051	6095	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0052	4691	2	0	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0053	5365	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0054	5926	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0055	5534	2	2	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0056	5926	2	0	0	0	0	2	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0057	5366	2	0	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0058	4178	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0059	5020	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0060	5020	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0061	5194	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0062	5532	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0063	6094	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0064	5532	1	0	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0065	5197	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0066	6095	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718