Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APBA3_chr19_3745772_3766692	0/0	a0009	575	2	0	0	0	0	2	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0010	575	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0011	575	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0012	575	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0013	575	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0014	575	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0015	575	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0016	575	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0017	575	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0018	575	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0019	575	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0020	575	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0021	575	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0022	575	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0023	575	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0024	575	1	0	1	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0025	575	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0026	575	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	a0027	575	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBB1IP_chr10_26433341_26572803	1/1	a0001	666	323	64	62	153	8	34	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0002	666	13	13	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0003	666	6	5	1	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0004	665	4	4	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0005	666	3	3	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0006	666	2	0	2	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0007	666	2	2	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0008	666	2	2	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0009	666	1	0	1	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0010	670	1	1	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	a0011	666	1	0	0	1	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1_chr11_6390125_6424094	1/1	a0001	710	402	93	80	160	17	50	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	a0002	710	6	0	6	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	a0003	710	4	0	0	4	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	a0004	710	1	1	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	a0005	710	1	1	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	a0006	710	1	1	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	a0007	710	1	0	0	0	1	0	copy fasta	APBB1	chr11	6390125	6424094
APBB2_chr4_40805027_41219542	0/1	a0001	759	109	20	31	38	7	12	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	1/0	a0002	759	79	55	10	8	1	4	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	a0003	759	3	0	3	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	a0004	759	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB3_chr5_140553268_140569598	0/1	a0001	486	358	86	62	162	15	32	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	1/0	a0002	486	35	5	6	19	0	4	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	a0003	486	6	5	1	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	a0004	486	4	0	0	4	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	a0005	486	2	0	0	2	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	a0006	486	2	0	0	0	2	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	a0007	486	2	0	1	0	0	1	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	a0008	486	1	0	0	0	0	1	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	a0009	486	1	0	0	1	0	0	copy fasta	APBB3	chr5	140553268	140569598