JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	SAS	aseq	genename	chr	start	end
MUC6_chr11_1007823_1041718	0/0	a0067	4860	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0068	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0069	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0070	5366	1	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0071	1720	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0072	1726	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0073	5366	1	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0074	4522	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0075	5366	1	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0076	4973	1	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0077	5366	1	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0078	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0079	5534	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0080	5366	1	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0081	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0082	5366	1	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0083	5366	1	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0084	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0085	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0086	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0087	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0088	5366	1	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0089	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0090	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0091	5366	1	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0092	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0093	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0094	5366	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0095	5926	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0096	5534	1	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0097	6095	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0098	6095	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0099	5926	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0100	6264	1	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0101	5926	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0102	4861	1	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0103	6264	1	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0104	6264	1	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0105	5534	1	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0106	6656	1	1	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0107	5252	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0108	5926	1	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0109	5926	1	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0110	5926	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0111	5926	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0112	5365	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0113	5926	1	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0114	5926	1	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0115	5926	1	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0116	5926	1	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718