JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUL1_chr1_20494448_20513151	0/0	a0006	352	1	1	0	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUS81_chr11_65855433_65871439	1/0	a0001	551	225	57	41	110	2	14	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/1	a0002	551	139	14	28	63	6	27	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0003	551	5	5	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0004	551	5	5	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0005	551	4	0	0	4	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0006	551	4	4	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0007	551	3	0	0	3	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0008	551	2	0	0	2	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0009	551	2	0	1	0	0	1	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0010	551	2	2	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0011	551	1	0	1	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0012	551	1	0	1	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	a0013	551	1	1	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUSK_chr9_110663791_110811558	1/1	a0001	869	215	45	57	73	9	29	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0002	869	24	18	0	4	0	2	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0003	869	23	0	0	19	2	2	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0004	869	22	0	0	19	0	3	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0005	869	20	0	2	11	1	6	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0006	869	12	0	2	9	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0007	869	2	2	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0008	869	1	0	1	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0009	869	1	0	0	0	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0010	869	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0011	869	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0012	869	1	1	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0013	869	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0014	869	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	a0015	869	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSTN1_chr3_52828121_52840019	0/1	a0001	82	369	73	78	161	14	42	copy fasta	MUSTN1	chr3	52828121	52840019
MUSTN1_chr3_52828121_52840019	1/0	a0002	82	18	15	2	0	0	0	copy fasta	MUSTN1	chr3	52828121	52840019
MUSTN1_chr3_52828121_52840019	0/0	a0003	82	1	0	0	1	0	0	copy fasta	MUSTN1	chr3	52828121	52840019
MUTYH_chr1_45324242_45344970	1/0	a0001	521	213	61	34	87	7	23	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0002	521	162	27	35	86	5	9	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/1	a0003	521	9	0	1	0	5	2	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0004	521	6	6	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0005	521	3	1	0	0	0	2	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0006	521	2	0	0	2	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0007	521	2	0	2	0	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0008	521	1	1	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0009	521	1	0	0	0	1	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0010	521	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0011	521	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	a0012	521	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45345440	1/0	a0001	549	215	61	34	89	7	23	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	a0002	549	162	27	35	86	5	9	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/1	a0003	549	9	0	1	0	5	2	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	a0004	549	6	6	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	a0005	549	3	1	0	0	0	2	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	a0006	549	2	0	0	2	0	0	copy fasta	MUTYH	chr1	45324242	45345440