JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUTYH_chr1_45324242_45345440	0/0	a0007	549	2	0	2	0	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	a0008	549	1	1	0	0	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	a0009	549	1	0	0	0	1	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	a0010	549	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	a0011	549	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	a0012	549	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MVB12A_chr19_17415047_17430332	1/1	a0001	273	388	92	72	169	16	37	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	a0002	273	4	1	3	0	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	a0003	273	2	1	0	1	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	a0004	273	2	0	1	0	0	1	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	a0005	273	2	0	0	2	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	a0006	273	1	0	0	0	1	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	a0007	273	1	0	0	0	1	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12B_chr9_126321829_126512040	1/1	a0001	319	318	80	64	128	10	34	copy fasta	MVB12B	chr9	126321829	126512040
MVD_chr16_88646940_88668091	1/1	a0001	400	418	92	78	183	16	47	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0002	400	2	0	0	2	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0003	400	2	2	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0004	400	2	0	0	2	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0005	400	2	0	0	2	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0006	400	2	2	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0007	400	1	0	0	0	0	1	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0008	400	1	1	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0009	400	1	1	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0010	400	1	0	0	1	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0011	400	1	0	0	1	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	a0012	400	1	0	0	1	0	0	copy fasta	MVD	chr16	88646940	88668091
MVK_chr12_109568794_109603125	1/1	a0001	396	365	78	61	167	15	42	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	a0002	396	15	9	5	0	1	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	a0003	396	1	0	0	1	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	a0004	396	1	1	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVP_chr16_29815462_29853021	1/1	a0001	893	208	62	30	82	5	27	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0002	893	6	0	0	6	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0003	893	4	4	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0004	893	2	2	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0005	893	2	1	0	0	0	1	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0006	893	1	0	0	0	1	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0007	893	1	0	0	1	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0008	893	1	0	1	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0009	893	1	1	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0010	893	1	1	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0011	893	1	1	0	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0012	893	1	0	0	1	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	a0013	889	1	0	1	0	0	0	copy fasta	MVP	chr16	29815462	29853021
MX1_chr21_41421239_41464212	1/0	a0001	662	233	41	32	133	6	20	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/1	a0002	662	155	39	40	47	8	20	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	a0003	662	6	4	2	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	a0004	662	4	4	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	a0005	662	3	3	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	a0006	662	2	2	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	a0007	662	1	0	0	1	0	0	copy fasta	MX1	chr21	41421239	41464212