JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MX1_chr21_41421239_41464212	0/0	a0008	662	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	a0009	662	1	0	0	1	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	a0010	662	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	a0011	662	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX2_chr21_41357027_41414393	1/1	a0001	715	331	65	65	140	18	41	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0002	715	26	15	3	7	0	1	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0003	715	2	2	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0004	715	2	2	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0005	715	1	0	0	0	0	1	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0006	715	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0007	715	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0008	715	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0009	715	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0010	715	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0011	715	1	0	0	0	0	1	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0012	715	1	0	1	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0013	715	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0014	715	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0015	715	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0016	715	1	0	1	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	a0017	715	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MXD1_chr2_69910109_69947945	1/1	a0001	221	415	95	76	194	12	36	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	a0002	221	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	a0003	221	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	a0004	221	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD3_chr5_177302210_177316898	1/1	a0001	206	396	95	71	166	16	46	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	a0002	206	6	4	0	0	2	0	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	a0003	206	1	1	0	0	0	0	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	a0004	206	1	0	1	0	0	0	copy fasta	MXD3	chr5	177302210	177316898
MXD4_chr4_2242432_2267109	1/1	a0001	209	366	98	70	158	8	30	copy fasta	MXD4	chr4	2242432	2267109
MXI1_chr10_110202605_110292365	1/1	a0001	295	363	78	62	170	10	41	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	a0002	295	7	0	0	6	0	1	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	a0003	295	1	1	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	a0004	295	1	1	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXRA5_chrX_3303565_3351652	0/1	a0001	2828	96	8	18	55	7	7	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	1/0	a0002	2828	70	7	18	31	2	11	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0003	2828	51	10	6	28	1	6	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0004	2828	8	7	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0005	2828	7	7	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0006	2828	5	3	2	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0007	2828	5	5	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0008	2828	4	4	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0009	2828	4	0	0	4	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0010	2828	3	3	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0011	2828	3	3	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0012	2828	2	0	0	0	0	2	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0013	2828	2	2	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0014	2828	2	1	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0015	2828	2	0	2	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0016	54	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652