JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MXRA5_chrX_3303565_3351652	0/0	a0017	2828	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0018	2828	1	0	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0019	2828	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0020	2828	1	0	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0021	2828	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0022	2828	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0023	2120	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0024	2828	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0025	2828	1	0	0	0	1	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0026	2828	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0027	2828	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0028	2828	1	0	0	0	0	1	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0029	2828	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0030	2828	1	0	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0031	2828	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0032	2828	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0033	2828	1	0	0	0	0	1	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0034	54	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	a0035	2828	1	1	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA7_chr17_76674566_76715965	1/0	a0001	170	356	79	67	156	14	39	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/1	a0002	170	60	21	5	24	2	7	copy fasta	MXRA7	chr17	76674566	76715965
MXRA8_chr1_1347691_1363555	1/1	a0001	442	313	75	52	126	15	43	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	a0002	442	17	14	1	0	1	1	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	a0003	442	3	3	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	a0004	442	1	0	0	1	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	a0005	442	1	0	0	0	0	1	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	a0006	442	1	0	1	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	a0007	442	1	0	0	1	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	a0008	442	1	0	0	0	0	1	copy fasta	MXRA8	chr1	1347691	1363555
MYADML2_chr17_81934645_81952233	0/0	a0001	307	194	61	35	69	10	19	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	1/1	a0002	307	153	28	27	76	4	16	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0003	307	8	1	2	0	0	5	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0004	307	8	0	0	8	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0005	307	5	0	1	0	3	1	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0006	307	2	0	0	0	1	1	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0007	307	1	0	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0008	307	1	0	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0009	307	1	0	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0010	307	1	1	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0011	307	1	0	0	1	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	a0012	307	1	1	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADM_chr19_53862883_53881435	1/1	a0001	322	368	90	72	154	8	42	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	a0002	322	7	0	0	6	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	a0003	322	2	0	0	1	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	a0004	322	1	0	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYBBP1A_chr17_4533904_4560384	1/1	a0001	1328	236	27	56	113	14	24	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	a0002	1328	58	6	9	32	1	10	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	a0003	1328	50	0	6	44	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	a0004	1328	17	17	0	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	a0005	1328	16	0	0	16	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384