JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYBBP1A_chr17_4533904_4560384	0/0	a0056	1328	1	0	0	1	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBL1_chr8_66557175_66618218	1/1	a0001	752	234	77	23	83	14	35	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	a0002	752	2	0	0	1	0	1	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	a0003	752	1	0	1	0	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	a0004	752	1	1	0	0	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL2_chr20_43662114_43721482	1/1	a0001	700	188	50	43	71	2	20	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	a0002	700	61	18	4	33	0	6	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	a0003	700	10	7	3	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	a0004	700	6	5	1	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	a0005	700	3	3	0	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	a0006	700	2	0	0	2	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	a0007	700	1	1	0	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	a0008	700	1	0	1	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	a0009	700	1	0	0	1	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	a0010	700	1	0	0	1	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBPC1_chr12_101589971_101691028	1/1	a0001	1171	280	79	40	118	8	33	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	a0002	1171	74	8	7	49	2	8	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	a0003	1171	2	0	0	2	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	a0004	1171	1	1	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	a0005	1171	1	0	1	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	a0006	1171	1	0	0	0	0	1	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	a0007	1171	1	0	0	1	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC2_chr19_50427892_50471321	1/1	a0001	1141	241	62	52	85	9	31	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0002	1141	52	0	20	18	5	9	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0003	1141	40	3	2	35	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0004	1141	7	6	1	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0005	1141	5	0	4	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0006	1141	5	0	0	5	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0007	1141	5	5	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0008	1141	4	2	0	0	0	2	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0009	1141	3	3	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0010	1141	2	2	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0011	1141	2	0	1	0	1	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0012	1141	2	0	0	2	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0013	1141	2	2	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0014	1141	2	2	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0015	1141	2	2	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0016	1141	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0017	1141	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0018	1141	1	0	1	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0019	1141	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0020	658	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0021	1141	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0022	1141	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0023	1141	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0024	1141	1	0	0	0	0	1	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0025	1141	1	0	0	0	1	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0026	1141	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0027	1141	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0028	1141	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321