JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYBPC2_chr19_50427892_50471321	0/0	a0029	1141	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0030	1141	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0031	1141	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0032	1141	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0033	1141	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0034	1141	1	0	1	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0035	1141	1	0	0	1	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0036	1141	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	a0037	1141	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC3_chr11_47326406_47357702	1/1	a0001	1274	322	73	49	148	13	37	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0002	1274	18	1	12	0	2	3	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0003	1274	7	0	3	0	2	2	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0004	1274	7	6	1	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0005	1274	3	0	1	2	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0006	1274	2	1	0	0	0	1	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0007	1274	2	0	0	2	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0008	1274	1	0	1	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0009	1274	1	0	0	0	0	1	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0010	1274	1	0	0	0	1	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0011	1274	1	1	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0012	1274	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0013	243	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0014	1274	1	0	1	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0015	1274	1	1	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0016	1166	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0017	1274	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0018	1274	1	1	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0019	1274	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	a0020	1274	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPHL_chr1_109287365_109312011	0/1	a0001	354	387	61	70	193	17	45	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	1/0	a0002	354	37	34	0	0	1	1	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0003	354	2	0	1	0	0	1	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0004	354	2	2	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0005	354	1	0	0	0	0	1	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0006	354	1	0	0	1	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0007	354	1	1	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0008	354	1	1	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0009	354	1	1	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0010	354	1	0	0	1	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0011	354	1	0	0	1	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	a0012	23	1	0	1	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPH_chr1_203162811_203180826	1/1	a0001	477	331	42	64	167	16	40	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	a0002	477	121	51	16	48	2	4	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	a0003	477	6	0	3	1	0	2	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	a0004	477	1	0	0	1	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	a0005	477	1	0	0	1	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	a0006	477	1	1	0	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	a0007	477	1	1	0	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	a0008	477	1	1	0	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	a0009	477	1	0	1	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826