Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APBB3_chr5_140553268_140569598	0/0	a0010	486	1	0	0	0	1	0	copy fasta	APBB3	chr5	140553268	140569598
APC2_chr19_1445121_1478244	1/1	a0001	2303	259	31	68	110	13	35	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0002	2303	18	15	0	1	1	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0003	2303	17	12	3	0	0	2	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0004	2303	12	11	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0005	2303	12	11	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0006	2303	2	0	0	2	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0007	2303	2	0	0	2	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0008	2303	2	0	2	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0009	2303	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0010	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0011	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0012	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0013	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0014	2303	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0015	2303	1	0	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0016	2303	1	0	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0017	2303	1	0	0	0	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0018	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0019	2303	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0020	2303	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0021	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0022	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0023	2295	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0024	2303	1	0	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0025	2303	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0026	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0027	2303	1	0	0	0	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0028	2303	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0029	2303	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0030	2303	1	0	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0031	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0032	2303	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0033	2303	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	a0034	2303	1	0	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APCDD1L_chr20_58454101_58520399	0/0	a0001	501	148	49	25	52	7	15	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	1/1	a0002	501	126	30	31	41	6	16	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0003	501	57	4	8	44	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0004	501	18	4	1	12	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0005	501	13	0	2	11	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0006	501	5	4	1	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0007	501	3	3	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0008	501	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0009	501	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0010	501	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0011	501	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0012	501	1	0	0	0	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	a0013	501	1	0	0	0	1	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1_chr18_10449635_10494949	1/1	a0001	514	365	94	61	161	16	31	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	a0002	514	50	0	9	26	2	13	copy fasta	APCDD1	chr18	10449635	10494949