JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYB_chr6_135176308_135224172	1/1	a0001	761	384	78	63	183	16	42	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	a0002	761	4	4	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	a0003	761	3	3	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	a0004	761	3	3	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	a0005	761	2	1	1	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	a0006	761	1	1	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	a0007	761	1	0	0	1	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	a0008	761	1	1	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	a0009	761	1	1	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYCBP2_chr13_77039657_77332094	1/1	a0001	4678	304	69	54	145	8	26	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0002	4678	9	8	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0003	4678	3	0	0	3	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0004	4678	3	0	0	3	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0005	4678	2	0	0	2	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0006	4678	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0007	4678	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0008	4678	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0009	4678	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0010	4678	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0011	4678	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0012	4678	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0013	4678	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0014	4678	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0015	4678	1	0	0	0	0	1	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0016	4678	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0017	4678	1	0	0	1	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	a0018	4678	1	0	0	0	0	1	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBPAP_chr17_50503439_50536501	0/0	a0001	941	177	16	44	87	10	20	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/1	a0002	941	66	38	8	8	1	10	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	1/0	a0003	941	58	3	20	19	5	10	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0004	941	11	11	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0005	941	8	0	2	6	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0006	941	5	3	2	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0007	941	5	5	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0008	941	5	0	0	5	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0009	941	4	4	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0010	941	3	0	2	0	0	1	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0011	941	3	3	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0012	941	3	3	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0013	941	3	0	0	0	0	3	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0014	941	2	0	1	0	0	1	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0015	941	2	2	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0016	941	2	2	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0017	941	2	0	0	2	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0018	941	2	0	0	0	1	1	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0019	941	2	1	1	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0020	941	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0021	941	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0022	941	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0023	941	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501