JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYCBPAP_chr17_50503439_50536501	0/0	a0024	941	1	0	0	0	1	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0025	941	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0026	941	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0027	941	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0028	941	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0029	941	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0030	941	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0031	941	1	1	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	a0032	941	1	0	0	1	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBP_chr1_38857493_38878348	1/1	a0001	103	434	92	74	206	16	44	copy fasta	MYCBP	chr1	38857493	38878348
MYCL_chr1_39890428_39906917	0/1	a0001	364	389	94	60	190	13	31	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	1/0	a0002	364	22	1	6	0	5	9	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	a0003	364	1	0	0	1	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	a0004	364	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	a0005	364	1	0	0	1	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCN_chr2_15935550_15952004	1/1	a0001	464	428	85	72	206	18	45	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	a0002	464	4	4	0	0	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	a0003	464	2	0	0	2	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	a0004	464	1	1	0	0	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	a0005	464	1	0	0	0	0	1	copy fasta	MYCN	chr2	15935550	15952004
MYCT1_chr6_152692897_152729569	1/1	a0001	235	338	74	56	165	7	34	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	a0002	54	51	7	6	37	0	1	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	a0003	235	46	3	17	20	3	3	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	a0004	235	3	0	0	3	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	a0005	235	2	2	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	a0006	235	2	0	0	2	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	a0007	235	1	0	1	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	a0008	235	1	0	0	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYC_chr8_127731231_127747951	1/1	a0001	439	434	97	71	198	16	50	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	a0002	439	4	0	4	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	a0003	439	1	1	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	a0004	439	1	0	1	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	a0005	439	1	0	1	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	a0006	439	1	0	1	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYD88_chr3_38133661_38148022	1/1	a0001	296	407	90	72	191	14	38	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	a0002	65	1	0	0	1	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYDGF_chr19_4652545_4675342	1/1	a0001	173	287	30	74	129	15	37	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	a0002	173	121	63	6	48	3	1	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	a0003	173	1	0	0	1	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	a0004	173	1	1	0	0	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYEF2_chr15_48129632_48183295	0/1	a0001	600	221	66	22	115	0	17	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	a0002	600	32	13	12	6	0	1	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	a0003	600	5	0	0	5	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	1/0	a0004	600	4	2	1	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	a0005	600	1	0	1	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	a0006	600	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEOV_chr11_69289155_69302287	1/1	a0001	313	183	10	52	88	13	18	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0002	313	103	47	9	40	1	6	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0003	313	69	14	2	42	1	10	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	a0004	313	18	4	6	3	1	4	copy fasta	MYEOV	chr11	69289155	69302287